The Bioconductor package 'geneplotter' might be useful, http://bioconductor.org/packages/2.1/bioc/html/geneplotter.html
Martin "Bernd Jagla" <[EMAIL PROTECTED]> writes: > Hi Jim, > > I don't have an explicit example. But, most genome browsers have something > similar and much more sophisticated than what I am looking for: e.g. > http://www.ensembl.org/Homo_sapiens/contigview?seq_region_right=158821424&se > q_region_name=7&click_right=490&click_left=40&seq_region_left=1&seq_region_w > idth=100000&vclick.x=20&vclick.y=131 > The problem I have with these representations is that they are all about ONE > gene/region. I want to be able to see less information but for multiple > genes. I haven't seen this for any of the data bases. > > Thanks for your kind help. > > Bernd > > |-----Original Message----- > |From: Jim Lemon [mailto:[EMAIL PROTECTED] > |Sent: Tuesday, November 27, 2007 5:30 AM > |To: Bernd Jagla > |Subject: Re: [R] looking for packages that visualize nucleotide sequence > |properties > | > |Bernd Jagla wrote: > |> Hi there, > |> > |> I am looking for R-packages that can help me visualize properties on > |> nucleotide sequences. I want to display sequences in the 1-100K base > |range > |> as lines and plot features above and below those lines. > |> > |> Any ideas would be welcome. > |> > |Is there an example of what you want that we could view? > | > |Jim > > ______________________________________________ > [email protected] mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
