Dear all,
I have a data which is in text file and i would like to import the data to R.
From the manual, ive found the read.table command function is the most
appropriate but when i wrote the command an error had occur. It say Error in
read.table"C:/Users/user/Documents/cfa-1.txt", header = T, sep = "\t",skip=10)
:more columns than column names. Please help me with this as im a first time
user to R.
Thanks in advance.
Cheers,
Anisah
---------------------------------
Listing breakpoints, Conserved Segments and Conserved Segments Ordered
locations :
----------------------------------------------------------------------------------
Reference Chromosome (1) vs Dataset 2
---------------------------------
CS(O) id (number of marker/anchor) Location(s) on reference CS(O)
size CS(O) density on reference chromosome Location(s) on tested
Breakpoints CS(O) locations (denstiy of marker/anchor)
CS 1 (73): cfa1: [ 3251712 - 24126920 ] 20875208 3 hsa18:
[ 132170848 - 50139168 ] ] 24126920, 24153560 [(8 )
CS 2 (3): cfa1: [ 24153560 - 24265894 ] 112334 27 hsa18:
[ 50105060 - 49934572 ] ] 24265894, 24823786 [(7 )
CSO 3.1 (6): cfa1: [ 24823786 - 27113036 ] 2289250 3 hsa18:
[ 48121156 - 46579500 ]- Decreasing order - ] 27113036, 27418228 [ (13)
CSO 3.2 (4): cfa1: [ 27418228 - 27578150 ] 159922 25 hsa18:
[ 13872043 - 13208795 ]- Decreasing order - ] 27578150, 28055666 [(9 )
CS 4 (4): cfa1: [ 28055666 - 28835230 ] 779564 5 hsa6:
[ 132311008 - 133132200 ] ] 28835230, 29482792 [(7 )
CS 5 (46): cfa1: [ 29482792 - 40120672 ] 10637880 4 hsa6:
[ 133604208 - 146227152 ] ] 40120672, 40539680 [(8 )
CS 6 (9): cfa1: [ 40539680 - 43339444 ] 2799764 3 hsa6:
[ 146390608 - 149867328 ] ] 43339444, 43390788 [(13 )
CSO 7.1 (74): cfa1: [ 43390788 - 59714992 ] 16324204 5 hsa6:
[ 149929104 - 169714432 ]- Increasing order -] 59714992, 59864308 [ (15)
CSO 7.2 (52): cfa1: [ 59864308 - 72417520 ] 12553212 4 hsa6:
[ 116707976 - 131508152 ]- Increasing order - ] 72417520, 73256040 [(7 )
CSO 8.1 (12): cfa1: [ 73256040 - 75192808 ] 1936768 6 hsa9:
[ 98441680 - 96360824 ]- Decreasing order - ] 75192808, 75272528 [ (6 )
CSO 8.2 (56): cfa1: [ 75272528 - 91881664 ] 16609136 3 hsa9:
[ 89530256 - 70341312 ]- Decreasing order - ] 91881664, 92281272 [ (5 )
CSO 8.3 (22): cfa1: [ 92281272 - 96913624 ] 4632352 5 hsa9:
[ 261625 - 5755076 ]- Increasing order - ] 96913624, 98067040 [ (5 )
CSO 8.4 (15): cfa1: [ 98067040 - 100692560 ] 2625520 6 hsa9:
[ 93833248 - 89771184 ]- Decreasing order - ] 100692560, 101013264 [ (13 )
CSO 8.5 (18): cfa1: [ 101013264 - 102120080 ] 1106816 16 hsa9:
[ 95832896 - 94012312 ]- Decreasing order -] 102271920,102458192 [(25 )
CS 9 (55): cfa1: [ 102458192 - 105936824 ] 3478632 16 hsa19:
[ 63765096 - 59618416 ] ] 105936824, 106097392 [(35 )
CSO 10.1 (81): cfa1: [ 106097392 - 110263696 ] 4166304 19 hsa19:
[ 59386008 - 54256216 ]- Decreasing order - ] 110263696,110288752 [ (60 )
CSO 10.2 (18): cfa1: [ 110288752 - 110567608 ] 278856 65 hsa19:
[ 54163196 - 53814360 ]- Decreasing order - ] 110567608,110575576 [ (50 )
CSO 10.3 (60): cfa1: [ 110575576 - 112727048 ] 2151472 28 hsa19:
[ 53649284 - 50959884 ]- Decreasing order - ] 112727048,112775144 [(40 )
CS 11 (173): cfa1: [ 112775144 - 119848336 ] 7073192 24 hsa19:
[ 50887772 - 40849556 ] ] 119848336, 119880560 [(55 )
CS 12 (33): cfa1: [ 119880560 - 121690672 ] 1810112 18 hsa19:
[ 40824500 - 38556448 ] ] 121690672, 121820640 [(16 )
CS 13 (22): cfa1: [ 121820640 - 124798800 ] 2978160 7 hsa19:
[ 38391408 - 34709332 ] ] 124798800, Telomere [(-NA-)
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