On 23.06.2010 13:29 (UTC+1), jim smith wrote:
Been and R-user for about 5 years now in an industrial setting, and
always find the mailing list most helpful. I have run into problem
compiling igraph on R. I have contacted the maintainer of igraph, and
he has determined that it is not an igraph problem.
System is FreeBSD 7.2, R-2.10.1 [also have a sandbox machine running
FreeBSD 7.3, R-2.11]. Both machines fail the installation of igraph.
Here is the error:
I am working with R-2.11.1 on FreeBSD 9.0-CURRENT (amd64). On several
systems there had been no problems with installing igraph (0.5.3).
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library
'/usr/local/lib/R/library/igraph/libs/igraph.so': /usr/lib/libstdc+
+.so.6: version GLIBCXX_3.4.11 required
by /usr/local/lib/R/library/igraph/libs/igraph.so not found
Error : .onLoad failed in 'loadNamespace' for 'igraph'
I built the package, then ran the linker ldd to determine if libstdc+
+.so.6 were in the correct place [and found by igraph]:
libxml2.so.5 => /usr/local/lib/libxml2.so.5 (0x340e0000)
libz.so.4 => /lib/libz.so.4 (0x33d89000)
libiconv.so.3 => /usr/local/lib/libiconv.so.3 (0x3420a000)
libR.so => /usr/local/lib/libR.so (0x34300000)
libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x3455c000)
libm.so.5 => /lib/libm.so.5 (0x33d9b000)
libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x33db0000)
libc.so.7 => /lib/libc.so.7 (0x33c83000)
libblas.so.2 => /usr/local/lib/libblas.so.2 (0x33dbb000)
libgfortran.so.3 => /usr/local/lib/gcc44/libgfortran.so.3(0x34651000)
libintl.so.8 => /usr/local/lib/libintl.so.8 (0x34709000)
libreadline.so.7 => /lib/libreadline.so.7 (0x34712000)
libpcre.so.0 => /usr/local/lib/libpcre.so.0 (0x34744000)
liblzma.so.0 => /usr/local/lib/liblzma.so.0 (0x34778000)
libbz2.so.3 => /usr/lib/libbz2.so.3 (0x347a1000)
libicuuc.so.38 => /usr/local/lib/libicuuc.so.38 (0x347b2000)
libicui18n.so.38 => /usr/local/lib/libicui18n.so.38 (0x348d0000)
libncurses.so.7 => /lib/libncurses.so.7 (0x34a27000)
libthr.so.3 => /lib/libthr.so.3 (0x34a66000)
libicudata.so.38 => /usr/local/lib/libicudata.so.38 (0x34a7b000)
This is what I get from my igraph.so library:
#ldd /usr/local/lib/R/library/igraph/libs/igraph.so
/usr/local/lib/R/library/igraph/libs/igraph.so:
libxml2.so.5 => /usr/local/lib/libxml2.so.5 (0x41000000)
libz.so.6 => /lib/libz.so.6 (0x4124b000)
libiconv.so.3 => /usr/local/lib/libiconv.so.3 (0x41361000)
libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x4155b000)
libm.so.5 => /lib/libm.so.5 (0x4176b000)
libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x4188b000)
libc.so.7 => /lib/libc.so.7 (0x40648000)
So it appears to be there, but still I get this error. Any guidance?
The only idea I have is that there could be a problem with the compiler
version you used to compile igraph. Perhaps R himself an igraph are
build with different compilers?
Thanks.
Hope this help a little bit,
Rainer
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
