For a quick fix, you probably need to reinstall plyr. Hadley On Wed, Jul 14, 2010 at 11:03 PM, stephen sefick <ssef...@gmail.com> wrote: > This is the first time that I have tried to update packages with a > tinkered around with .Rprofile. I start R with R --vanilla and it > does not load my .Rprofile, but when I issue the command > update.packages() R downloads the packages as expected, but then seems > to load .Rprofile before compiling the packages sources. What am I > doing wrong? > kindest regards, > > Stephen Sefick > > see- Session info output and .Rprofile > > Ubuntu 10.04 > R 2.11.1 > > Session info: > > R version 2.11.1 (2010-05-31) > x86_64-pc-linux-gnu > > > locale: > [1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C > [3] LC_TIME=en_US.utf8 LC_COLLATE=en_US.utf8 > [5] LC_MONETARY=C LC_MESSAGES=en_US.utf8 > [7] LC_PAPER=en_US.utf8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C > > attached base packages: > [1] graphics grDevices utils datasets stats grid methods > [8] base > > other attached packages: > [1] gpclib_1.5-1 StreamMetabolism_0.03-3 maptools_0.7-34 > [4] lattice_0.18-8 sp_0.9-64 foreign_0.8-40 > [7] chron_2.3-35 zoo_1.6-3 vegan_1.17-3 > [10] ggplot2_0.8.8 proto_0.3-8 reshape_0.8.3 > [13] plyr_0.1.9 > > > .Rprofile: > #source USGS graphing function for base data > source("~/R_scripts/USGS.R") > source("~/R_scripts/publication_ggplot2_theme.R") > source("~/R_scripts/llScript.R") > > > #set help_type > options(help_type="html") > > #exit to get around anoying q behavior > exit <- function(save="no"){q(save=save)} > > #most used libraries > library(ggplot2) > library(vegan) > library(StreamMetabolism) > > #allow gpclib package to be used > gpclibPermit() > > > > -- > Stephen Sefick > ____________________________________ > | Auburn University | > | Department of Biological Sciences | > | 331 Funchess Hall | > | Auburn, Alabama | > | 36849 | > |___________________________________| > | sas0...@auburn.edu | > | http://www.auburn.edu/~sas0025 | > |___________________________________| > > Let's not spend our time and resources thinking about things that are > so little or so large that all they really do for us is puff us up and > make us feel like gods. We are mammals, and have not exhausted the > annoying little problems of being mammals. > > -K. Mullis > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >
-- Assistant Professor / Dobelman Family Junior Chair Department of Statistics / Rice University http://had.co.nz/ ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.