Hello list,
Ive been trying to get OpenBUGS running on my mac using the wine emulator. I
can run Openbugs just fine by doing:
wine ~/OpenBUGS312/OpenBUGS.exe
In the terminal, so OpenBUGS works. When I try to run the schools example
using rbugs(), the OpenBUGS process starts in wine, but it just sits there, no
log, no script, no output of any sort. The rbugs() call makes the init, data,
model and script file, but there seems to be a problem with R piping the script
to OpenBUGS, here is my example
library(rbugs)
data(schools)
J <- nrow(schools)
y <- schools$estimate
y <- rnorm(length(y))
sigma.y <- schools$sd
schools.data <- list ("J", "y", "sigma.y")
## schools.data <- list(J=J, y=y, sigma.y=sigma.y)
inits <- function() {list (theta=rnorm(J,0,100),
mu.theta=rnorm(1,0,100),
sigma.theta=runif(1,0,100))}
parameters <- c("theta", "mu.theta", "sigma.theta")
schools.bug <- file.path(.path.package("rbugs"), "bugs/model", "schools.bug")
file.show(schools.bug)
#This almost runs, it makes all files, but doesn't run the script
schools.sim <- rbugs(data=schools.data, inits, parameters,
schools.bug, n.chains=3, n.iter=10000,seed=123,
workingDir="/Users/ozd504/Documents/",
bugsWorkingDir="/Users/ozd504/Documents/",
useWine=TRUE,
wine="/opt/local/bin/wine",
bugs = "/Users/ozd504/OpenBUGS312/OpenBUGS.exe",OpenBugs=T,
debug=TRUE)
This Returns an error saying that bugs terminated before the coda could be
written
I can also send a screen shot of what happens if anyone is interested. Any
help would be most appreciated. Here is my sessionInfo()
R version 2.12.1 (2010-12-16)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] R2WinBUGS_2.1-16 coda_0.14-2 lattice_0.19-13 rbugs_0.4-9
loaded via a namespace (and not attached):
[1] grid_2.12.1 tools_2.12.1
Thanks,
Corey
Corey S. Sparks, Ph.D.
Assistant Professor
Department of Demography and Organization Studies
University of Texas San Antonio
501 West Durango Blvd
San Antonio, TX 78207
email:[email protected]
web: https://rowdyspace.utsa.edu/users/ozd504/www/index.htm
[[alternative HTML version deleted]]
______________________________________________
[email protected] mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
