As an alternative, you could try the HWExact function in the GWASExactHW package. (Haven't tried it myself though ...).
Brad ----- Original Message ----- > From: "Jim Silverton" <[email protected]> > To: [email protected] > Sent: Tuesday, 12 July, 2011 8:33:54 PM > Subject: Re: [R] Hardy Weinberg Case Control Test in gap R package > Hi, > I am using the gap R package to do the Hardy Weinberg Case Control > test for > many SNP. I am not sure what the values initial1 and initial2 should > be for > the test. I tried values but they failed. > I emailed the author but to no avail. There seems to be some > documentation > that is deleted at the top, if anyone can direct me how to get this I > will > be grateful. > > -- > Thanks, > Jim. > > [[alternative HTML version deleted]] > > ______________________________________________ > [email protected] mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
