Thanks All!
On Thu, Dec 8, 2011 at 7:41 PM, Robert Baer <[email protected]> wrote:
> Hello All,
> This works,
> results <- read.table("plink.txt",T)
>
> while this doesn't.
> results <- read.table("plink.txt")
> --------------------
> The T is the value for the second parameter which you show from the help
> file printout you looked at to be header. Thus, you are writing in short
> cut:
> results <- read.table("plink.txt", header=T) # parameters are assigned
> by position when names are not explicit.
>
> Further, you should know that T is a variable with the value TRUE
> (boolean). Most people recommend you write it out to avoid unexpected
> reassignments of the variable T to something other than TRUE. Thus, you
> should write:
> results <- read.table("plink.txt", header=TRUE) # this is explicit of
> what works for plink.txt
>
> Finally, by header = TRUE, you are saying that the first row of your file
> contains the column headings for your data which apparently it does if it
> it works. Hopes this helps you understand the help file which at least you
> took the time to read. Good on you!
>
> HTH,
> Rob
>
>
>
> Make sure your data frame contains columns CHR, BP, and P
>
> What does adding the "T" in read.table do? Which argument does this
> correspond to? I tried searching for it but didn't find the answer in:
>
>
> read.table(file, header = FALSE, sep = "", quote = "\"'",
> dec = ".", row.names, col.names,
> as.is = !stringsAsFactors,
> na.strings = "NA", colClasses = NA, nrows = -1,
> skip = 0, check.names = TRUE, fill = !blank.lines.skip,
> strip.white = FALSE, blank.lines.skip = TRUE,
> comment.char = "#",
> allowEscapes = FALSE, flush = FALSE,
> stringsAsFactors = default.stringsAsFactors(),
> fileEncoding = "", encoding = "unknown")
>
>
> Could someone please explain?
> Thanks
> P
>
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>
> ______________________________**________________
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> PLEASE do read the posting guide http://www.R-project.org/**
> posting-guide.html <http://www.R-project.org/posting-guide.html>
> and provide commented, minimal, self-contained, reproducible code.
>
>
> ------------------------------**------------
> Robert W. Baer, Ph.D.
> Professor of Physiology
> Kirksville College of Osteopathic Medicine
> A. T. Still University of Health Sciences
> 800 W. Jefferson St.
> Kirksville, MO 63501
> 660-626-2322
> FAX 660-626-2965
>
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