On Feb 19, 2012, at 2:48 AM, dberringer wrote: > I have been trying to get JGR up and running but so far no luck. I installed > R from source using the homebrew package manager and everything works fine > and I was able to install JGR and all its dependencies. Every time I try to > start JGR I get the error below. Any idea why I'm getting the Segmentation > fault? Thanks. >
There are a few fishy things in your output (apart form using homebrew R which has its issues): a) you get permission denied in the library of your installed R b) you are using CRAN R's library path in your home - so potentially you may have a clash of CRAN packages vs homebrew I would strongly recommend using CRAN R to make your life easier. We don't officially support homebrew R (it is a home brew after all ;)) so you may need to change the launcher if it doesn't follow the same layout as CRAN R. Also it could be an issue in homebrew R - we have seen random segfaults in it before. Finally, if you use Apple's gcc-4.2 and don't disable OpenMP in R it will segfault in any threaded code, including JGR, due to bugs in the old gomp that come with gcc-4.2 (but that comes usually much later when you actually use R). Cheers, Simon > System Info: > OSX 10.7.2 > R version 2.14.1 (2011-12-22) > java version "1.6.0_29" > Java(TM) SE Runtime Environment (build 1.6.0_29-b11-402-11M3527) > Java HotSpot(TM) 64-Bit Server VM (build 20.4-b02-402, mixed mode) > > Error: > => /usr/local/Cellar/r/2.14.1/R.framework/Versions/2.14/Resources/jgrLaunch > ; exit; > /usr/local/Cellar/r/2.14.1/R.framework/Versions/2.14/Resources/library: > Permission denied. > Loading preferences from /Users/User/.JGRprefsrc > JGR R_HOME: /usr/local/Cellar/r/2.14.1/R.framework/Resources > libroot: /Users/User/Library/R/2.14/library/ > Attempting to load jnilib: > /Users/User/Library/R/2.14/library/rJava/jri/libjri.jnilib > Segmentation fault > logout > > [Process completed] > > > > > -- > View this message in context: > http://r.789695.n4.nabble.com/JGR-Segmentation-fault-tp4401260p4401260.html > Sent from the R help mailing list archive at Nabble.com. > > ______________________________________________ > [email protected] mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > > ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
