Hi Alexander --

On 03/15/2012 07:57 AM, Alexander wrote:
Hi,
I would like to create some S4 classes as follows

setClass("Father",representation(name="character"))
setClass("Son1",contains="Father",representation(par="numeric"))
setClass("Son2",contains="Father",representation(par="logical"))

Son1<-new("Son1")
Son1@name<-"Son1"
Son1@par<-3

it's more efficient to call new("Son1", name="Son1", par=3)

Son2<-new("Son2")
Son2@name<-"Son2"
Son2@par<-TRUE

setGeneric("get.par",function(object){standardGeneric ("get.par")})

functions with '.' in their names can be confusing, because it could represent an S3 generic on 'get', for an S3 object of class 'par'.

setMethod("get.par","Son1",function(object){return(object@par+3)})
setMethod("get.par","Son2",function(object){return(!object@par)})

get.par(Son1)
get.par(Son2)

So far, so good. I would like now, to create a new class, which
"extends"/"contains" the subclasses of Father by some additional slots.
Is there any clean and simple possibility to inherite also the corresponding
function get.par ?

setClass("Extension",representation(person="Father",text="character"))
Ext<-new("Extension")
Ext@text<-"new try"
Ext@person<-Son1
get.par(Ext)
get.par(Ext@person)

Of course, "get.par(Ext)" returns an error. Is there any possibility to tell
R, that if now function exists for a Class, to transform the object to a
class, for which the function exists ? (I know, it is not very clear what I
am writing, but I am doing my best). I don't want to rewrite every method
for  "Extension" like

setMethod("get.par","Extension",function(object){get.par(object@person)})

Is there any simpler solution by steClassUnion, setAs, setIs .... ?

You can provide an explicit relationship

setIs("Extension", "Father",
      coerce=function(from) from@person,
      replace=function(from, value) {
          from@person <- value
          from
      })

and then define a method on 'Father' (since that's what you're asserting equivalence to)

setMethod("get.par", "Father", function(object) object@name)

and finally have success with

ext <- new("Extension",
           person=new("Son1", name="Son1", par=3),
           text="new try")

> get.par(ext)
[1] "Son1"

Neat, eh? But it really pays to ask whether the complexity of the class structure you're creating is appropriate for the solution that you need to implement -- imagine, for instance, writing a method that dispatches on two arguments, and as a programmer you need to implement appropriate methods for the tangle of dispatch that you have created.

Martin


Thanks a lot in advance

Alexander

--
View this message in context: 
http://r.789695.n4.nabble.com/Extending-a-group-of-S4-classes-by-setClassUnion-tp4475251p4475251.html
Sent from the R help mailing list archive at Nabble.com.

______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


--
Computational Biology
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109

Location: M1-B861
Telephone: 206 667-2793

______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Reply via email to