On Thu, May 31, 2012 at 6:40 AM, Oliver Ruebenacker <cur...@gmail.com> wrote: > Hello, > > Is there a convenient way to import RDF/OWL data into R? > > I'm interested in importing BioPAX/SBPAX data into R to make them > available for a wider audience. One exciting application would be to > use pathway data to explain differential microarray measurements by > identifying upstream nodes that are likely involved in causing the > differences. This could also be used to validate pathways or to > estimate concentrations or kinetic parameters. > > If no convenient method to import RDF/OWL exists, I would be happy > to take the lead in creating a light-weight R package based on rjava > and OpenRDF Sesame Rio that could query RDF/OWL data and turn the > results into data frames.
Maybe take a look at: http://www.bioconductor.org/packages/2.6/bioc/vignettes/Rredland/inst/doc/Rredland.pdf James ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
