Thanks. It was very helpful.
Y
On Sun, Jul 29, 2012 at 2:45 AM, arun <[email protected]> wrote:
> Hello,
>
> I tried to do the same thing that you have done. Without the timestamps
> as rownames (xts object), there were no errors.
>
> dat1<-read.table(text="
> dive_id date time species count size
> 1 08/06/2008 8:49:00 S.OYT 15 6
>
> 1 08/06/2008 8:49:00 S.atrovirens 1 23
> ",header=TRUE, sep="")
> dat2<-dat1
> saveRDS(dat2,"dat2.rds")
> dat3<-readRDS("dat2.rds")
> str(dat3)
> #'data.frame': 2 obs. of 6 variables:
> # $ dive_id: int 1 1
> # $ date : Factor w/ 1 level "08/06/2008": 1 1
> # $ time : Factor w/ 1 level "8:49:00": 1 1
> # $ species: Factor w/ 2 levels "S.atrovirens",..: 2 1
> # $ count : int 15 1
> # $ size : int 6 23
> dat3$count<-as.numeric(dat3$count)
> is.numeric(dat3$count)
> #[1] TRUE
>
> ####Now with timestamps as row.names
> library(xts)
>
> DateTime<-as.POSIXct(c("2008-08-06 08:49:00","2008-08-06
> 08:49:00"),format="%Y-%m-%d %H:%M")
> dat4<-xts(dat1,order.by=DateTime)
> saveRDS(dat4,"dat4.rds")
> dat5<-readRDS("dat4.rds")
> identical(dat4,dat5)
> #[1] TRUE
> dat5$count<-as.numeric(dat5$count)
> #Here, I didn't get the warning message that you got
> > is.numeric(dat5$count)
> #[1] FALSE
> #So, I assume that it is not because of reading the file as an RDS
> extension, but reading it as an xts object.
> #You can convert the xts to dataframe and do the conversion of "count"
> column to numeric.
> dat6<-data.frame(date=index(dat5),coredata(dat5))
>
>
> str(dat6)
> #'data.frame': 2 obs. of 7 variables:
> #$ date : POSIXct, format: "2008-08-06 08:49:00" "2008-08-06 08:49:00"
> #$ dive_id: Factor w/ 1 level "1": 1 1
> #$ date.1 : Factor w/ 1 level "08/06/2008": 1 1
> #$ time : Factor w/ 1 level "8:49:00": 1 1
> #$ species: Factor w/ 2 levels "S.atrovirens",..: 2 1
> #$ count : Factor w/ 2 levels " 1","15": 2 1
> #$ size : Factor w/ 2 levels "23"," 6": 2 1
> dat6$count<-as.numeric(dat6$count)
> is.numeric(dat6$count)
> #[1] TRUE
> I hope this helps.
>
> A.K.
>
>
>
>
>
>
>
> ----- Original Message -----
> From: Yolande Tra <[email protected]>
> To: R help <[email protected]>
> Cc:
> Sent: Saturday, July 28, 2012 10:23 PM
> Subject: [R] readRDS, In as.double.xts(fishReport$count) : NAs introduced
> by coercion
>
> Hello,
>
> I looked in the R-help but could not find an archive addressing the
> following. I would like to convert a character to numeric after reading a
> file with RDS extension. After using as.numeric, I checked if it is
> numeric. It was not converted. Please help.
>
> Here is my code
>
> >Report <- readRDS(file="RDS/Report.RDS")
> > Report[1:2,]
> dive_id date time species count
> size
> 2008-08-06 08:49:00 " 1" "08/06/2008" "8:49:00" "S. OYT" "15"
> "6"
> 2008-08-06 08:49:00 " 1" "08/06/2008" "8:49:00" "S. atrovirens" "1"
> "23"
> site depth level TRANSECT VIS_M TEMP_C swell_URSKI
> 2008-08-06 08:49:00 "Hopkins" "15" "B" "1" "3.5" "13.9" "1.0686708"
> 2008-08-06 08:49:00 "Hopkins" "15" "B" "1" "3.5" "13.9" "1.0686708"
> > Report$count<-as.numeric(Report$count)
> Warning message:
> In as.double.xts(fishReport$count) : NAs introduced by coercion
> >is.numeric(Report$count)
> [1] FALSE
> Thank you,
> Y
>
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>
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>
>
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