On 05.02.2013 17:08, Ozgul Inceoglu wrote:
Hello,
I calculate the correlation between two matrices cor(x,y, method="spearman")
and I am wondering if it possible to see only the significant correlations. I can
do that for single OTUs with cor.test() command but I would like to have an output
for whole matrix. Besides,I would like to plot the relative abundance of each OTU,
against the number of significant pair-wise correlations to other OTUs. However, I
do not know how to introduce p <.05 parameter in the script.
Please read the posting guide that suggests to submit reproducible code.
We can hardly help "how to introduce p <.05 parameter in the script" if
we do not know that script.
Best,
Uwe Ligges
Thank you very much!
Ozgul
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______________________________________________
[email protected] mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
