I have a matrix of p values below. Column1 are the analytes and the other
columns are p values comparing time points.
How do I convert this table of pvalues into adjust p values for FDR/BH
This is wrong does anyone know how to fix this code
a<-read.table("file", header=T, sep"\t")
b<-as.numeric(as.matrix((a[,2:8])))
p.adjust(b, "BH")
Analyte -0.5-8 -0.5-12 -0.5-24 -0.5-168 8-12 12-24
24-168
1_1 0.98 0.31 0.71 0.73 0.54 0.08 0.02
2_1 0.51 0.03 0.65 0.64 0.18 0.02 0.90
3_1 0.92 0.18 0.49 0.93 0.12 0.04 0.37
4_1 0.18 0.52 0.86 0.17 0.68 0.68 0.67
5_1 0.20 0.59 0.05 0.61 0.24 0.02 0.17
6_1 0.86 0.92 0.83 0.23 0.74 0.92 0.97
7_1 0.86 0.28 0.04 0.58 0.20 0.00 0.08
8 0.00 0.05 0.10 0.90 0.98 0.95 0.21
9 0.00 0.03 0.04 0.37 0.77 0.86 0.18
10 0.00 0.07 0.10 0.90 1.00 0.98 0.18
11 0.05 0.04 0.14 0.14 0.74 0.86 0.87
12 0.00 0.31 0.07 0.09 0.02 0.28 0.00
13 0.80 0.42 0.98 0.09 0.21 0.42 0.04
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