Just because the subject mentions R doesn't mean it is on topic here. This is 
more related to Windows than R. I recommend studying windows documentation for 
awhile. A quick search turned up a number of discussions on the web, including 
http://stackoverflow.com/questions/1035388/unicode-output-on-windows-command-line.
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Sent from my phone. Please excuse my brevity.

Ned Harding <[email protected]> wrote:

>So just to clarify - there is no way to use R CMD BATCH on windows with
>Unicode?  Any advice of how to use R in a batch mode with Unicode
>inputs and outputs?
>
>Ned.
>
>-----Original Message-----
>From: [email protected]
>[mailto:[email protected]] On Behalf Of Prof Brian Ripley
>Sent: Wednesday, June 26, 2013 12:45 AM
>To: [email protected]
>Subject: Re: [R] R CMD BATCH Unicode
>
>On 25/06/2013 20:35, Ned Harding wrote:
>> Just to clarify: The encoding didn't come through in the email. 
>print("éíôåëëåãåâáè") is meant to be a bunch of random greek
>characters.
>
>In that case the message is likely correct.  You failed to give us the
>'at a minimum information' required by the posting guide, but you can
>only have input scripts in the locale encoding (and there are no UTF-8
>locales on Windows).  So unless you were in a Greek locale, the
>re-encoding should have failed.
>
>> Ned.
>>
>> -----Original Message-----
>> From: [email protected] 
>> [mailto:[email protected]] On Behalf Of Ned Harding
>> Sent: Tuesday, June 25, 2013 11:35 AM
>> To: [email protected]
>> Subject: [R] R CMD BATCH Unicode
>>
>> Hey,
>>
>> I am looking for some help using Unicode with R CMD BATCH on windows.
>In particular I would like my input and output files to be UTF-8
>encoded.  My command line looks like this:
>>
>> r CMD BATCH --encoding=UTF-8 in.txt out.txt
>>
>> in.txt is utf-8 encoded and contains:
>>
>> print("éíôåëëåãåâáè")
>>
>> out.txt gets:
>>
>> + <ERROR: re-encoding failure from encoding 'UTF-8'>
>>
>> What is the proper way to specify encoding on the command line?
>>
>> Thanks in advance,
>>
>> Ned.
>>
>>      [[alternative HTML version deleted]]
>>
>> ______________________________________________
>> [email protected] mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide 
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>
>Please do, and note what it says about HTML mail, too.

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