Hi, I want to generate a LD plot that looks like the triangle in the lower part of the output of snp.plotter()
As I would not use the values of the original LD measure (instead I use a more general measure) I have calulated pairwise "correlation" on my own. I could arrange the results in a data frame like chr1 pos1 snp1 chr2 pos2 snp2 ld Is there a way/ function to generate a LD plot without prior calculation of LD done by R? Which function can I use based on my own calculations? Thanks! ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
