Your LyX example has two problems: 1) We don't have your .RData; 2)
You didn't library(reshape) and library(lattice). Hence it is not a
self-contained reproducible example.

After fixing these two issues, I don't see why lattice graphics can be
problematic with knitr. There is no need to print() the plot, and no
need to pdf(), either. See the attached PDF I generated.

Regards,
Yihui
--
Yihui Xie <xieyi...@gmail.com>
Web: http://yihui.name


On Fri, Jul 10, 2015 at 7:18 PM, Rich Shepard <rshep...@appl-ecosys.com> wrote:
> On Fri, 10 Jul 2015, David Winsemius wrote:
>
>> #Generally one needs to complete a pdf() call with:
>>
>> dev.off()
>>
>> # And an empty file is the symptom os such a failure.
>
>
>
> David,
>
>   I did leave that off the example file, but it make no difference. The
> attached is the compiled example.pdf
>
> Rich
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Attachment: example.pdf
Description: Adobe PDF document

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