This is a rather broad request. If you are looking for help understanding these topics, you should probably ask in a forum where statistical theory is on topic (e.g. stats.stackexchange.com), since in this forum you should already have a good idea of what algorithms you want to apply and in what sequence and be asking about how to get R to do that. In practically all cases you should have some reproducible (including sample data) code that illustrates how far you have come, and specific questions about how to link the dots. Sample data is crucial.

I also highly recommend reading the vignettes and documentation associated with each the packages you plan to use. For example, functions in the "zoo" (note that capitalization matters) package can be used to create rolling averages, and then those results can be given to functions in another package (such as "vars"... note again that capitalization makes a difference) to analyze the original data along with the zoo results. While there may be experts in both packages you name lurking in this forum, often people may only be familiar with one or none of the packages you name but they may be able to interpret why something you are trying to do is not working if they can reproduce what you have already done. There are thousands of different R packages, but not nearly so many active helpers on R-help.

Also, you can use the "findFn" function in the "sos" package to search for "granger causality" among all available R packages on CRAN and find that there are several packages that match, so the "vars" package is not your only option.

Try reading [1] to get a feel for how to communicate your problem effectively.

[1] 
http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example

On Sun, 12 Jul 2015, Syed Jawad Hussain Shahzad wrote:

Dear Sir, Hi

I am new to R and want some help on the subject analysis. I need help
to apply causality analysis (available in Package 'VARS') with a
per-define rolling window (like rollapply in Package 'Zoo').

Best Wishes
Jawad

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