Hello, I have a dataset of 985 genes, looks something like the ones below. I want to label only those with the high intensities, since labeling all doesn't show up. Is there a way to do that? If not, is there a way to pull out the highest ones (say, highest 50, or those above X amount) and only show those in a heat map? Thanks!
-Angela Z transforming gives all cells the same value, just + or - (for example, all have 0.5 and -0.5). The researchers want the actual values used. Gene var1 var2 A 8000000 0 B 250000 300000 C 750000 2000000 D 0 0 E 4000000 6000000 E 5000000 700000 E 1000000 1000000 F 6000000 6000000 F 700000 827460 G 420930 400000 H 0 0 H 1000000 1000000 I 700000 600000 J 0 700000 K 0 0 L 200000 500000 L 1000000 3000000 ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
