On 04/09/2015 5:18 PM, Roger Xu wrote: > y0 <- runif(100, 0, 1) > y1 <- runif(100, 0, 1) > y2 <- runif(100, 0, 1) > > y0 <- c(y0, runif(100, 0, 10) ) > y1 <- c(y1, runif(100, 0, 10) ) > y2 <- c(y2, runif(100, 0, 10) ) > > y0=as.numeric(unlist(y0)) > y1=as.numeric(unlist(y1)) > y2=as.numeric(unlist(y2)) > > b=10 > a=length(y0)/b > g=rep(1:a,rep(b,a)) > > m1 <- manova(cbind(y0, y1, y2) ~ g) > s=summary(m1, test = "Wilks") > > a = s$stats > a = a[11] > s > a
If you plot any of the y columns vs g you see a huge effect. You aren't testing whether the y's are equal, you are testing whether the triplets depend on g, and they do. Duncan Murdoch ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.