Im sorry for everything. I didnt mean to make you loose your time, its just im really new at r and i'm still trying to understand some things. plus my english is not great :/
I'm really sorry. My problem is solved, thank you for your help. Kind regards Fábio Monteiro 2016-02-22 19:54 GMT+00:00 Jeff Newmiller <jdnew...@dcn.davis.ca.us>: > "data" is the name of a function in base R. It is not a good idea to use > that as the name of an actual data object (to which the "$" operator is > being applied here). It is not clear from what you have provided what > variable names you are working with... you are not communicating yet using > reproducible examples, so you are depending on our psychic powers to fill > in the gaps, which is not likely to work reliably. I suspect that Stephen > used the generic term "data" since he did not know what variable name you > were actually using. > > > http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example > > > On Mon, 22 Feb 2016, Fabio Monteiro wrote: > > hist(data$FRic) >>> >> Error in data$FRic : object of type 'closure' is not subsettable >> >> 2016-02-22 14:10 GMT+00:00 stephen sefick <ssef...@gmail.com>: >> >> Please see ?dput. What you provided is not a minimal, reproducible example >>> (i.e., there is no R code). >>> >>> What kind of plot are you trying to plot? hist(data$FRic) will plot your >>> data. I guess we need more information to be helpful. >>> >>> >>> On Mon, Feb 22, 2016 at 8:03 AM, Fabio Monteiro < >>> fabio.monteiro1...@gmail.com> wrote: >>> >>> This is the output. >>>> >>>> I want to plot, for example FRic >>>> >>>> $nbsp >>>> com1 com2 com3 com4 com5 com6 com7 com8 com9 com10 com11 com12 >>>> com13 com14 com15 com16 >>>> 17 21 18 12 15 20 16 12 18 15 18 16 >>>> 10 11 17 20 >>>> com17 com18 com19 com20 com21 com22 com23 com24 com25 com26 com27 com28 >>>> com29 com30 com31 com32 >>>> 9 13 11 10 11 15 12 16 18 18 11 19 >>>> 12 13 13 12 >>>> com33 com34 com35 com36 com37 com38 com39 com40 com41 com42 com43 com44 >>>> com45 com46 com47 com48 >>>> 15 11 15 8 7 12 10 9 12 15 13 13 >>>> 15 13 10 16 >>>> com49 com50 com51 com52 com53 com54 com55 com56 com57 com58 com59 com60 >>>> com61 com62 com63 com64 >>>> 14 12 14 13 14 13 15 13 11 12 16 13 >>>> 9 8 11 15 >>>> com65 com66 com67 com68 com69 com70 com71 com72 com73 com74 com75 com76 >>>> com77 com78 com79 com80 >>>> 13 18 13 15 10 11 12 11 14 8 10 12 >>>> 11 12 14 13 >>>> com81 com82 >>>> 9 12 >>>> >>>> $sing.sp >>>> com1 com2 com3 com4 com5 com6 com7 com8 com9 com10 com11 com12 >>>> com13 com14 com15 com16 >>>> 17 21 18 12 15 20 16 12 18 15 18 16 >>>> 10 11 17 20 >>>> com17 com18 com19 com20 com21 com22 com23 com24 com25 com26 com27 com28 >>>> com29 com30 com31 com32 >>>> 9 13 11 10 11 15 12 16 18 18 11 19 >>>> 12 13 13 12 >>>> com33 com34 com35 com36 com37 com38 com39 com40 com41 com42 com43 com44 >>>> com45 com46 com47 com48 >>>> 14 11 15 8 7 12 10 9 12 15 13 13 >>>> 15 13 10 16 >>>> com49 com50 com51 com52 com53 com54 com55 com56 com57 com58 com59 com60 >>>> com61 com62 com63 com64 >>>> 14 12 13 13 14 13 15 13 11 12 16 13 >>>> 9 8 11 15 >>>> com65 com66 com67 com68 com69 com70 com71 com72 com73 com74 com75 com76 >>>> com77 com78 com79 com80 >>>> 13 17 13 15 10 11 12 11 14 8 10 12 >>>> 11 12 14 13 >>>> com81 com82 >>>> 9 12 >>>> >>>> $FRic >>>> com1 com2 com3 com4 com5 >>>> com6 com7 >>>> 3.669752e-04 6.898164e-04 6.893918e-04 3.935451e-05 1.436140e-04 >>>> 1.012949e-03 2.934536e-04 >>>> com8 com9 com10 com11 com12 >>>> com13 com14 >>>> 1.001556e-04 6.425547e-04 1.740235e-04 5.561802e-04 2.964362e-04 >>>> 1.480860e-05 1.060512e-04 >>>> com15 com16 com17 com18 com19 >>>> com20 com21 >>>> 4.121157e-04 5.346433e-04 1.108007e-06 5.726895e-05 8.593435e-06 >>>> 1.452446e-05 1.855957e-05 >>>> com22 com23 com24 com25 com26 >>>> com27 com28 >>>> 2.128971e-04 8.438329e-05 3.216279e-04 2.529525e-04 4.980317e-04 >>>> 3.111325e-05 6.290088e-04 >>>> com29 com30 com31 com32 com33 >>>> com34 com35 >>>> 3.559802e-05 5.907167e-05 8.906878e-05 2.510168e-05 1.929088e-04 >>>> 1.234508e-04 2.784301e-04 >>>> com36 com37 com38 com39 com40 >>>> com41 com42 >>>> 1.480560e-08 1.411752e-06 5.576549e-05 2.445569e-05 6.167242e-06 >>>> 1.210002e-04 1.666034e-04 >>>> com43 com44 com45 com46 com47 >>>> com48 com49 >>>> 1.203484e-04 7.347513e-05 8.991003e-05 8.691148e-05 6.718789e-05 >>>> 1.357136e-04 1.821851e-04 >>>> com50 com51 com52 com53 com54 >>>> com55 com56 >>>> 4.832203e-05 8.391627e-05 2.173971e-04 1.355160e-04 1.304425e-04 >>>> 1.787888e-04 1.759204e-05 >>>> com57 com58 com59 com60 com61 >>>> com62 com63 >>>> 9.307474e-05 1.185857e-04 2.776166e-04 1.277143e-04 5.905299e-06 >>>> 9.606009e-08 1.019480e-04 >>>> com64 com65 com66 com67 com68 >>>> com69 com70 >>>> 2.395355e-04 2.307081e-04 4.019309e-04 6.874506e-05 1.417622e-04 >>>> 5.675463e-06 9.878848e-05 >>>> com71 com72 com73 com74 com75 >>>> com76 com77 >>>> 6.907251e-05 8.938528e-05 2.493585e-04 1.214151e-09 2.419942e-05 >>>> 1.183863e-04 7.457464e-05 >>>> com78 com79 com80 com81 com82 >>>> 6.284563e-05 1.741100e-04 2.128749e-04 2.920847e-06 9.368270e-05 >>>> >>>> $qual.FRic >>>> [1] 0.7035642 >>>> >>>> $FEve >>>> com1 com2 com3 com4 com5 com6 com7 >>>> com8 com9 >>>> 0.2388515 0.3996566 0.3350494 0.2943431 0.3576785 0.3846561 0.4319967 >>>> 0.5857688 0.4271764 >>>> com10 com11 com12 com13 com14 com15 com16 >>>> com17 com18 >>>> 0.3288544 0.4625139 0.4810921 0.3041395 0.5820621 0.6313595 0.5406627 >>>> 0.2707035 0.4530424 >>>> com19 com20 com21 com22 com23 com24 com25 >>>> com26 com27 >>>> 0.3015171 0.5790744 0.7253301 0.5441404 0.4481694 0.6187607 0.5445650 >>>> 0.4955940 0.5116752 >>>> com28 com29 com30 com31 com32 com33 com34 >>>> com35 com36 >>>> 0.5221560 0.5670513 0.4293040 0.4812907 0.4915317 0.3878949 0.4287726 >>>> 0.2893205 0.5835605 >>>> com37 com38 com39 com40 com41 com42 com43 >>>> com44 com45 >>>> 0.7896749 0.5482274 0.4015703 0.5990018 0.5431955 0.6251919 0.6023954 >>>> 0.4962892 0.3749658 >>>> com46 com47 com48 com49 com50 com51 com52 >>>> com53 com54 >>>> 0.4290664 0.4932756 0.5870607 0.3415984 0.3242199 0.4296702 0.4971491 >>>> 0.3272834 0.4865427 >>>> com55 com56 com57 com58 com59 com60 com61 >>>> com62 com63 >>>> 0.3428716 0.4653631 0.5479140 0.5698272 0.4777804 0.4525375 0.5916255 >>>> 0.4652363 0.4111973 >>>> com64 com65 com66 com67 com68 com69 com70 >>>> com71 com72 >>>> 0.3987632 0.3856989 0.3064660 0.4717288 0.3534531 0.4285679 0.6087836 >>>> 0.3607790 0.5494437 >>>> com73 com74 com75 com76 com77 com78 com79 >>>> com80 com81 >>>> 0.4214327 0.4360703 0.3808632 0.2833824 0.2876808 0.3380949 0.3421757 >>>> 0.2249389 0.6562824 >>>> com82 >>>> 0.6041267 >>>> >>>> $FDiv >>>> com1 com2 com3 com4 com5 com6 com7 >>>> com8 com9 >>>> 0.7423817 0.7458169 0.8679783 0.8226750 0.8373889 0.7877725 0.8070008 >>>> 0.7379254 0.8131881 >>>> com10 com11 com12 com13 com14 com15 com16 >>>> com17 com18 >>>> 0.7050804 0.6976598 0.7512530 0.6806472 0.6994011 0.7276620 0.7870732 >>>> 0.8793599 0.7562019 >>>> com19 com20 com21 com22 com23 com24 com25 >>>> com26 com27 >>>> 0.8983302 0.7681038 0.8163501 0.8198178 0.8489976 0.8922742 0.8442970 >>>> 0.8269863 0.7891795 >>>> com28 com29 com30 com31 com32 com33 com34 >>>> com35 com36 >>>> 0.7569559 0.8674167 0.7436638 0.7317634 0.9541561 0.7466859 0.7087626 >>>> 0.8006321 0.8511148 >>>> com37 com38 com39 com40 com41 com42 com43 >>>> com44 com45 >>>> 0.7729260 0.7509163 0.6905947 0.8466404 0.7677596 0.8791198 0.8211045 >>>> 0.7259760 0.7992553 >>>> com46 com47 com48 com49 com50 com51 com52 >>>> com53 com54 >>>> 0.7573869 0.8788377 0.9036087 0.8287276 0.7762280 0.8064715 0.7775368 >>>> 0.7828276 0.8151245 >>>> com55 com56 com57 com58 com59 com60 com61 >>>> com62 com63 >>>> 0.7503195 0.9213640 0.9141396 0.9150055 0.8348691 0.7271261 0.7875414 >>>> 0.8338675 0.7070272 >>>> com64 com65 com66 com67 com68 com69 com70 >>>> com71 com72 >>>> 0.7189990 0.7043998 0.7768710 0.7264939 0.8140790 0.7532290 0.7309884 >>>> 0.9190267 0.8540992 >>>> com73 com74 com75 com76 com77 com78 com79 >>>> com80 com81 >>>> 0.7531779 0.8520790 0.7649957 0.7319195 0.7578687 0.7915857 0.7600834 >>>> 0.7303097 0.7693079 >>>> com82 >>>> 0.7487281 >>>> >>>> $FDis >>>> com1 com2 com3 com4 com5 com6 >>>> com7 com8 >>>> 0.19178600 0.15352983 0.23419296 0.20315128 0.18604639 0.14348855 >>>> 0.28989249 0.25752544 >>>> com9 com10 com11 com12 com13 com14 >>>> com15 com16 >>>> 0.26174957 0.15962395 0.17907612 0.19642851 0.12827329 0.20114316 >>>> 0.18128942 0.25731184 >>>> com17 com18 com19 com20 com21 com22 >>>> com23 com24 >>>> 0.25855225 0.19576353 0.26366092 0.27728602 0.29546846 0.20720052 >>>> 0.27212077 0.30880887 >>>> com25 com26 com27 com28 com29 com30 >>>> com31 com32 >>>> 0.29440458 0.25396646 0.25647806 0.23422171 0.25464177 0.24311894 >>>> 0.16182038 0.09958014 >>>> com33 com34 com35 com36 com37 com38 >>>> com39 com40 >>>> 0.13095167 0.12983413 0.24224903 0.18239337 0.19817113 0.26320996 >>>> 0.11766508 0.30940641 >>>> com41 com42 com43 com44 com45 com46 >>>> com47 com48 >>>> 0.23583814 0.30624876 0.27750572 0.16747032 0.21445188 0.24327116 >>>> 0.20589103 0.27339261 >>>> com49 com50 com51 com52 com53 com54 >>>> com55 com56 >>>> 0.23614656 0.23678552 0.25641929 0.26260242 0.22516659 0.25243952 >>>> 0.23674896 0.18732040 >>>> com57 com58 com59 com60 com61 com62 >>>> com63 com64 >>>> 0.27202483 0.22947018 0.31342777 0.17997456 0.18461335 0.32429534 >>>> 0.14840674 0.13731830 >>>> com65 com66 com67 com68 com69 com70 >>>> com71 com72 >>>> 0.20437128 0.23298402 0.14830718 0.27194825 0.09289396 0.23196338 >>>> 0.17920946 0.25265696 >>>> com73 com74 com75 com76 com77 com78 >>>> com79 com80 >>>> 0.23525249 0.22171523 0.21972879 0.23523622 0.25336830 0.22477734 >>>> 0.20430806 0.20674064 >>>> com81 com82 >>>> 0.14270928 0.22673005 >>>> >>>> $RaoQ >>>> com1 com2 com3 com4 com5 com6 >>>> com7 com8 >>>> 0.05331536 0.03630438 0.07372825 0.06071274 0.05671961 0.05128404 >>>> 0.10541586 0.08965742 >>>> com9 com10 com11 com12 com13 com14 >>>> com15 com16 >>>> 0.09102682 0.04333067 0.04941515 0.05495308 0.03115535 0.06048519 >>>> 0.06070379 0.08680368 >>>> com17 com18 com19 com20 com21 com22 >>>> com23 com24 >>>> 0.07256118 0.05321952 0.08855815 0.10718949 0.10760039 0.07391960 >>>> 0.09163325 0.11476244 >>>> com25 com26 com27 com28 com29 com30 >>>> com31 com32 >>>> 0.10458183 0.08833300 0.07746703 0.07975863 0.08699710 0.07029682 >>>> 0.04116800 0.02091466 >>>> com33 com34 com35 com36 com37 com38 >>>> com39 com40 >>>> 0.03452371 0.03102533 0.07072961 0.04601163 0.05125527 0.08872861 >>>> 0.03608639 0.11227991 >>>> com41 com42 com43 com44 com45 com46 >>>> com47 com48 >>>> 0.07155343 0.10655043 0.09463142 0.04483107 0.05149290 0.06818611 >>>> 0.05776898 0.08787335 >>>> com49 com50 com51 com52 com53 com54 >>>> com55 com56 >>>> 0.06689262 0.06673575 0.07673498 0.08209786 0.06165892 0.07169030 >>>> 0.07207671 0.05351944 >>>> com57 com58 com59 com60 com61 com62 >>>> com63 com64 >>>> 0.10496706 0.07830439 0.11178032 0.05616672 0.04961674 0.11105321 >>>> 0.03840657 0.03693797 >>>> com65 com66 com67 com68 com69 com70 >>>> com71 com72 >>>> 0.05718178 0.07088485 0.03711119 0.08826702 0.02446860 0.08202483 >>>> 0.05274964 0.07232899 >>>> com73 com74 com75 com76 com77 com78 >>>> com79 com80 >>>> 0.06245748 0.05668243 0.06019524 0.07375344 0.07743079 0.06009721 >>>> 0.05757830 0.05642231 >>>> com81 com82 >>>> 0.03665132 0.06852237 >>>> >>>> $CWM >>>> trait1 trait2 trait3 >>>> trait4 >>>> trait5 >>>> com1 Demersal Marine, brackish, freshwater 3.361717 Invertebrate >>>> Feeder >>>> Browser >>>> com2 Demersal Marine, brackish, freshwater 3.391770 Invertebrate >>>> Feeder >>>> Browser >>>> com3 Demersal Marine, brackish, freshwater 3.389626 Invertebrate >>>> Feeder >>>> Browser >>>> com4 Demersal Marine, brackish, freshwater 3.437043 Invertebrate >>>> Feeder >>>> Browser >>>> com5 Demersal Marine, brackish, freshwater 3.450760 Invertebrate >>>> Feeder >>>> Browser >>>> com6 Demersal Marine, brackish, freshwater 3.354952 Invertebrate >>>> Feeder >>>> Browser >>>> com7 Demersal Marine, brackish, freshwater 3.389917 Invertebrate >>>> Feeder >>>> Browser >>>> com8 Demersal Marine, brackish, freshwater 3.382973 Invertebrate >>>> Feeder >>>> Browser >>>> com9 Demersal Marine, brackish, freshwater 3.371722 Invertebrate >>>> Feeder >>>> Browser >>>> com10 Demersal Marine, brackish, freshwater 3.371057 Invertebrate >>>> Feeder >>>> Browser >>>> com11 Demersal Marine, brackish, freshwater 3.389740 Invertebrate >>>> Feeder >>>> Browser >>>> com12 Demersal Marine, brackish, freshwater 3.416626 Invertebrate >>>> Feeder >>>> Browser >>>> com13 Demersal Marine, brackish, freshwater 3.348563 Invertebrate >>>> Feeder >>>> Browser >>>> com14 Demersal Marine, brackish, freshwater 3.310051 Invertebrate >>>> Feeder >>>> Browser >>>> com15 Demersal Marine, brackish, freshwater 3.274433 Invertebrate >>>> Feeder >>>> Browser >>>> com16 Demersal Marine, brackish, freshwater 3.366033 Invertebrate >>>> Feeder >>>> Browser >>>> com17 Pelagic Marine, brackish, freshwater 3.284144 Invertebrate >>>> Feeder >>>> Browser/Hunter >>>> com18 Demersal Marine, brackish, freshwater 3.352978 Invertebrate >>>> Feeder >>>> Browser >>>> com19 Demersal Marine, brackish, freshwater 3.313528 Invertebrate >>>> Feeder >>>> Browser >>>> com20 Demersal Marine, brackish, freshwater 3.368486 Invertebrate >>>> Feeder >>>> Browser >>>> com21 Demersal Marine, brackish, freshwater 3.346555 Invertebrate >>>> Feeder >>>> Browser >>>> com22 Demersal Marine, brackish, freshwater 3.348779 Invertebrate >>>> Feeder >>>> Browser >>>> com23 Demersal Marine, brackish, freshwater 3.316949 Invertebrate >>>> Feeder >>>> Browser >>>> com24 Demersal Marine, brackish, freshwater 3.332521 Invertebrate >>>> Feeder >>>> Browser >>>> com25 Demersal Marine, brackish, freshwater 3.398814 Invertebrate >>>> Feeder >>>> Browser >>>> com26 Demersal Marine, brackish, freshwater 3.281393 Invertebrate >>>> Feeder >>>> Browser >>>> com27 Demersal Marine, brackish, freshwater 3.325194 Invertebrate >>>> Feeder >>>> Browser >>>> com28 Demersal Marine, brackish, freshwater 3.356956 Invertebrate >>>> Feeder >>>> Browser >>>> com29 Demersal Marine, brackish, freshwater 3.282245 Invertebrate >>>> Feeder >>>> Browser >>>> com30 Demersal Marine, brackish, freshwater 3.263298 Invertebrate >>>> Feeder >>>> Browser >>>> com31 Demersal Marine, brackish, freshwater 3.304036 Invertebrate >>>> Feeder >>>> Browser >>>> com32 Demersal Marine, brackish 3.230522 Invertebrate >>>> Feeder >>>> Browser >>>> com33 Demersal Marine, brackish, freshwater 3.347002 Invertebrate >>>> Feeder >>>> Browser >>>> com34 Demersal Marine, brackish, freshwater 3.430373 Invertebrate >>>> Feeder >>>> Browser >>>> com35 Demersal Marine, brackish, freshwater 3.318061 Invertebrate >>>> Feeder >>>> Browser >>>> com36 Demersal Marine, brackish, freshwater 3.334512 Invertebrate >>>> Feeder >>>> Browser >>>> com37 Demersal Marine, brackish, freshwater 3.354938 Invertebrate >>>> Feeder >>>> Browser >>>> com38 Demersal Marine, brackish, freshwater 3.282320 Invertebrate >>>> Feeder >>>> Browser >>>> com39 Demersal Marine, brackish, freshwater 3.307719 Invertebrate >>>> Feeder >>>> Browser >>>> com40 Demersal Marine, brackish 3.343822 Invertebrate >>>> Feeder >>>> Browser >>>> com41 Demersal Marine, brackish, freshwater 3.347152 Invertebrate >>>> Feeder >>>> Browser >>>> com42 Demersal Marine, brackish, freshwater 3.389799 Invertebrate >>>> Feeder >>>> Browser >>>> com43 Demersal Marine, brackish, freshwater 3.400693 Invertebrate >>>> Feeder >>>> Browser >>>> com44 Demersal Marine, brackish, freshwater 3.421323 Invertebrate >>>> Feeder >>>> Browser >>>> com45 Demersal Marine, brackish, freshwater 3.329006 Invertebrate >>>> Feeder >>>> Browser >>>> com46 Demersal Marine, brackish, freshwater 3.316793 Invertebrate >>>> Feeder >>>> Browser >>>> com47 Benthic Marine, brackish, freshwater 3.309663 Invertebrate >>>> Feeder >>>> Browser >>>> com48 Demersal Marine, brackish, freshwater 3.372207 Invertebrate >>>> Feeder >>>> Browser >>>> com49 Benthic Marine, brackish, freshwater 3.332736 Invertebrate >>>> Feeder >>>> Browser >>>> com50 Benthic Marine, brackish, freshwater 3.311616 Invertebrate >>>> Feeder >>>> Browser >>>> com51 Demersal Marine, brackish, freshwater 3.319775 Invertebrate >>>> Feeder >>>> Browser >>>> com52 Demersal Marine, brackish, freshwater 3.277058 Invertebrate >>>> Feeder >>>> Browser >>>> com53 Demersal Marine, brackish, freshwater 3.354429 Invertebrate >>>> Feeder >>>> Browser >>>> com54 Demersal Marine, brackish, freshwater 3.339532 Invertebrate >>>> Feeder >>>> Browser >>>> com55 Demersal Marine, brackish, freshwater 3.357153 Invertebrate >>>> Feeder >>>> Browser >>>> com56 Benthic Marine, brackish, freshwater 3.279952 Invertebrate >>>> Feeder >>>> Browser >>>> com57 Benthic Marine, brackish 3.126602 Invertebrate >>>> Feeder >>>> Browser >>>> com58 Benthic Marine, brackish 3.217454 Invertebrate >>>> Feeder >>>> Browser >>>> com59 Demersal Marine, brackish 3.307770 Invertebrate >>>> Feeder >>>> Browser >>>> com60 Demersal Marine, brackish 3.252970 Invertebrate >>>> Feeder >>>> Browser >>>> com61 Demersal Marine, brackish, freshwater 3.404601 Invertebrate >>>> Feeder >>>> Browser >>>> com62 Pelagic Marine, brackish, freshwater 2.806229 Invertebrate >>>> Feeder >>>> Browser >>>> com63 Demersal Marine, brackish, freshwater 3.287427 Invertebrate >>>> Feeder >>>> Browser >>>> com64 Demersal Marine, brackish, freshwater 3.292238 Invertebrate >>>> Feeder >>>> Browser >>>> com65 Demersal Marine, brackish 3.265497 Invertebrate >>>> Feeder >>>> Browser >>>> com66 Demersal Marine, brackish, freshwater 3.317879 Invertebrate >>>> Feeder >>>> Browser >>>> com67 Demersal Marine, brackish 3.258586 Invertebrate >>>> Feeder >>>> Browser >>>> com68 Demersal Marine, brackish, freshwater 3.203772 Invertebrate >>>> Feeder >>>> Browser >>>> com69 Demersal Marine, brackish, freshwater 3.289830 Invertebrate >>>> Feeder >>>> Browser >>>> com70 Demersal Marine, brackish 3.326195 Invertebrate >>>> Feeder >>>> Browser >>>> com71 Benthic Marine, brackish, freshwater 3.325590 Invertebrate >>>> Feeder >>>> Browser >>>> com72 Benthic Marine, brackish, freshwater 3.297994 Invertebrate >>>> Feeder >>>> Browser >>>> com73 Demersal Marine, brackish, freshwater 3.331968 Invertebrate >>>> Feeder >>>> Browser >>>> com74 Demersal Marine, brackish, freshwater 3.395514 Invertebrate >>>> Feeder >>>> Browser >>>> com75 Demersal Marine, brackish, freshwater 3.323936 Invertebrate >>>> Feeder >>>> Browser >>>> com76 Demersal Marine, brackish, freshwater 3.201015 Invertebrate >>>> Feeder >>>> Browser >>>> com77 Demersal Marine, brackish, freshwater 3.280311 Invertebrate >>>> Feeder >>>> Browser >>>> com78 Demersal Marine, brackish, freshwater 3.318771 Invertebrate >>>> Feeder >>>> Browser >>>> com79 Demersal Marine, brackish, freshwater 3.318253 Invertebrate >>>> Feeder >>>> Browser >>>> com80 Demersal Marine, brackish, freshwater 3.374939 Invertebrate >>>> Feeder >>>> Browser >>>> com81 Demersal Marine, brackish, freshwater 3.440927 Invertebrate >>>> Feeder >>>> Browser >>>> com82 Demersal Marine, brackish, freshwater 3.381153 Invertebrate >>>> Feeder >>>> Browser >>>> trait6 >>>> com1 0.5 - 1.0 >>>> com2 1.0 - 2.0 >>>> com3 1.0 - 2.0 >>>> com4 1.0 - 2.0 >>>> com5 1.0 - 2.0 >>>> com6 1.0 - 2.0 >>>> com7 1.0 - 2.0 >>>> com8 1.0 - 2.0 >>>> com9 0.5 - 1.0 >>>> com10 1.0 - 2.0 >>>> com11 1.0 - 2.0 >>>> com12 1.0 - 2.0 >>>> com13 0.5 - 1.0 >>>> com14 0.5 - 1.0 >>>> com15 0.5 - 1.0 >>>> com16 0.5 - 1.0 >>>> com17 1.0 - 2.0 >>>> com18 0.5 - 1.0 >>>> com19 0.5 - 1.0 >>>> com20 0.5 - 1.0 >>>> com21 0.5 - 1.0 >>>> com22 0.5 - 1.0 >>>> com23 1.0 - 2.0 >>>> com24 1.0 - 2.0 >>>> com25 1.0 - 2.0 >>>> com26 1.0 - 2.0 >>>> com27 1.0 - 2.0 >>>> com28 0.5 - 1.0 >>>> com29 0.5 - 1.0 >>>> com30 0.5 - 1.0 >>>> com31 0.5 - 1.0 >>>> com32 0.5 - 1.0 >>>> com33 0.5 - 1.0 >>>> com34 1.0 - 2.0 >>>> com35 0.5 - 1.0 >>>> com36 0.5 - 1.0 >>>> com37 1.0 - 2.0 >>>> com38 0.5 - 1.0 >>>> com39 0.5 - 1.0 >>>> com40 0.5 - 1.0 >>>> com41 0.5 - 1.0 >>>> com42 1.0 - 2.0 >>>> com43 1.0 - 2.0 >>>> com44 1.0 - 2.0 >>>> com45 < 0.5 >>>> com46 < 0.5 >>>> com47 < 0.5 >>>> com48 < 0.5 >>>> com49 < 0.5 >>>> com50 < 0.5 >>>> com51 < 0.5 >>>> com52 0.5 - 1.0 >>>> com53 0.5 - 1.0 >>>> com54 < 0.5 >>>> com55 < 0.5 >>>> com56 < 0.5 >>>> com57 < 0.5 >>>> com58 < 0.5 >>>> com59 0.5 - 1.0 >>>> com60 0.5 - 1.0 >>>> com61 1.0 - 2.0 >>>> com62 1.0 - 2.0 >>>> com63 0.5 - 1.0 >>>> com64 0.5 - 1.0 >>>> com65 0.5 - 1.0 >>>> com66 0.5 - 1.0 >>>> com67 0.5 - 1.0 >>>> com68 0.5 - 1.0 >>>> com69 0.5 - 1.0 >>>> com70 0.5 - 1.0 >>>> com71 < 0.5 >>>> com72 < 0.5 >>>> com73 < 0.5 >>>> com74 1.0 - 2.0 >>>> com75 0.5 - 1.0 >>>> com76 0.5 - 1.0 >>>> com77 1.0 - 2.0 >>>> com78 0.5 - 1.0 >>>> com79 0.5 - 1.0 >>>> com80 1.0 - 2.0 >>>> com81 1.0 - 2.0 >>>> com82 1.0 - 2.0 >>>> >>>> 2016-02-22 13:58 GMT+00:00 stephen sefick <ssef...@gmail.com>: >>>> >>>> If memory serves me, dbFD returns a lot of output. What do you want to >>>>> plot? Also, please provide reproducible examples, so that we can help >>>>> you >>>>> solve your R related queries. >>>>> kindest regards, >>>>> >>>>> Stephen >>>>> >>>>> On Mon, Feb 22, 2016 at 7:00 AM, Fabio Monteiro < >>>>> fabio.monteiro1...@gmail.com> wrote: >>>>> >>>>> Hi >>>>>> >>>>>> thank you for your quick answer >>>>>> >>>>>> I finally managed to insert everything correctly and dbFD is >>>>>> caltulated. >>>>>> >>>>>> I'm now trying to plot the results. >>>>>> >>>>>> My objects are matrices. >>>>>> >>>>>> x is a functional trait and species matrice. a is the species and >>>>>> samples >>>>>> >>>>>> Thank you >>>>>> >>>>>> 2016-02-22 12:19 GMT+00:00 PIKAL Petr <petr.pi...@precheza.cz>: >>>>>> >>>>>> > Hi >>>>>> > >>>>>> > comments inline >>>>>> > >>>>>> > > -----Original Message----- >>>>>> > > From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of >>>>>> Fabio >>>>>> > > Monteiro >>>>>> > > Sent: Monday, February 22, 2016 11:51 AM >>>>>> > > To: r-help@r-project.org >>>>>> > > Subject: [R] FD package >>>>>> > > >>>>>> > > Hi. >>>>>> > > >>>>>> > > First i would like to say that i'm really new in R. I recently >>>>>> started >>>>>> > > working with R and i'm using the FD package. >>>>>> > > >>>>>> > > I'm having some errors that doesn't make any sense. >>>>>> > > >>>>>> > > I have 2 matrix, one is the species with functional traits and the >>>>>> > > second one is the species and abundances. >>>>>> > >>>>>> > Your objects are matrices or data frames? From docs dbFD expects >>>>>> various >>>>>> > inputs byt they have to be properly formatted. >>>>>> > >>>>>> > > >>>>>> > > When I try to run the dbFD to calculate the functional diversity, >>>>>> the >>>>>> > > error is the number of species is different in x and a. >>>>>> > > >>>>>> > > I checked a lot of times and the number of species is the same and >>>>>> > > there are no mistakes in their names like spaces or caps. >>>>>> > >>>>>> > How did you checked? >>>>>> > >>>>>> > dim(trait) and dim(abund) >>>>>> > >>>>>> > shall give you the same number of rows in traits as columns in >>>>>> abund. >>>>>> > >>>>>> > If trait is vector, you need to use length instead of dim. >>>>>> > >>>>>> > > >>>>>> > > Can you help me? >>>>>> > >>>>>> > Without better description of your objects and code you used you >>>>>> hardly >>>>>> > get any answer. You can start by using examples from help page, >>>>>> which >>>>>> shall >>>>>> > work and see how your data differ from those examples. >>>>>> > >>>>>> > Cheers >>>>>> > Petr >>>>>> > >>>>>> > >>>>>> > > >>>>>> > > F?bio Monteiro >>>>>> > > >>>>>> > > [[alternative HTML version deleted]] >>>>>> > > >>>>>> > > ______________________________________________ >>>>>> > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >>>>>> > > https://stat.ethz.ch/mailman/listinfo/r-help >>>>>> > > PLEASE do read the posting guide >>>>>> http://www.R-project.org/posting- >>>>>> > > guide.html >>>>>> > > and provide commented, minimal, self-contained, reproducible code. >>>>>> > >>>>>> > ________________________________ >>>>>> > Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a >>>>>> jsou >>>>>> > ur?eny pouze jeho adres?t?m. >>>>>> > Jestli?e jste obdr?el(a) tento e-mail omylem, informujte laskav? >>>>>> > neprodlen? jeho odes?latele. Obsah tohoto emailu i s p??lohami a >>>>>> jeho >>>>>> kopie >>>>>> > vyma?te ze sv?ho syst?mu. >>>>>> > Nejste-li zam??len?m adres?tem tohoto emailu, nejste opr?vn?ni tento >>>>>> email >>>>>> > jakkoliv u??vat, roz?i?ovat, kop?rovat ?i zve?ej?ovat. >>>>>> > Odes?latel e-mailu neodpov?d? za eventu?ln? ?kodu zp?sobenou >>>>>> modifikacemi >>>>>> > ?i zpo?d?n?m p?enosu e-mailu. >>>>>> > >>>>>> > V p??pad?, ?e je tento e-mail sou??st? obchodn?ho jedn?n?: >>>>>> > - vyhrazuje si odes?latel pr?vo ukon?it kdykoliv jedn?n? o uzav?en? >>>>>> > smlouvy, a to z jak?hokoliv d?vodu i bez uveden? d?vodu. >>>>>> > - a obsahuje-li nab?dku, je adres?t opr?vn?n nab?dku bezodkladn? >>>>>> p?ijmout; >>>>>> > Odes?latel tohoto e-mailu (nab?dky) vylu?uje p?ijet? nab?dky ze >>>>>> strany >>>>>> > p??jemce s dodatkem ?i odchylkou. >>>>>> > - trv? odes?latel na tom, ?e p??slu?n? smlouva je uzav?ena teprve >>>>>> > v?slovn?m dosa?en?m shody na v?ech jej?ch n?le?itostech. >>>>>> > - odes?latel tohoto emailu informuje, ?e nen? opr?vn?n uzav?rat za >>>>>> > spole?nost ??dn? smlouvy s v?jimkou p??pad?, kdy k tomu byl p?semn? >>>>>> zmocn?n >>>>>> > nebo p?semn? pov??en a takov? pov??en? nebo pln? moc byly adres?tovi >>>>>> tohoto >>>>>> > emailu p??padn? osob?, kterou adres?t zastupuje, p?edlo?eny nebo >>>>>> jejich >>>>>> > existence je adres?tovi ?i osob? j?m zastoupen? zn?m?. >>>>>> >>>>>> > >>>>>> > This e-mail and any documents attached to it may be confidential and >>>>>> are >>>>>> > intended only for its intended recipients. >>>>>> > If you received this e-mail by mistake, please immediately inform >>>>>> its >>>>>> > sender. Delete the contents of this e-mail with all attachments and >>>>>> its >>>>>> > copies from your system. >>>>>> > If you are not the intended recipient of this e-mail, you are not >>>>>> > authorized to use, disseminate, copy or disclose this e-mail in any >>>>>> manner. >>>>>> > The sender of this e-mail shall not be liable for any possible >>>>>> damage >>>>>> > caused by modifications of the e-mail or by delay with transfer of >>>>>> the >>>>>> > email. >>>>>> > >>>>>> > In case that this e-mail forms part of business dealings: >>>>>> > - the sender reserves the right to end negotiations about entering >>>>>> into a >>>>>> > contract in any time, for any reason, and without stating any >>>>>> reasoning. >>>>>> > - if the e-mail contains an offer, the recipient is entitled to >>>>>> > immediately accept such offer; The sender of this e-mail (offer) >>>>>> excludes >>>>>> > any acceptance of the offer on the part of the recipient containing >>>>>> any >>>>>> > amendment or variation. >>>>>> > - the sender insists on that the respective contract is concluded >>>>>> only >>>>>> > upon an express mutual agreement on all its aspects. >>>>>> > - the sender of this e-mail informs that he/she is not authorized to >>>>>> enter >>>>>> > into any contracts on behalf of the company except for cases in >>>>>> which >>>>>> > he/she is expressly authorized to do so in writing, and such >>>>>> authorization >>>>>> > or power of attorney is submitted to the recipient or the person >>>>>> > represented by the recipient, or the existence of such authorization >>>>>> is >>>>>> > known to the recipient of the person represented by the recipient. >>>>>> > >>>>>> >>>>>> [[alternative HTML version deleted]] >>>>>> >>>>>> ______________________________________________ >>>>>> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >>>>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>>>> PLEASE do read the posting guide >>>>>> http://www.R-project.org/posting-guide.html >>>>>> and provide commented, minimal, self-contained, reproducible code. >>>>>> >>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> Stephen Sefick >>>>> ************************************************** >>>>> Auburn University >>>>> Biological Sciences >>>>> 331 Funchess Hall >>>>> Auburn, Alabama >>>>> 36849 >>>>> ************************************************** >>>>> sas0...@auburn.edu >>>>> http://www.auburn.edu/~sas0025 >>>>> ************************************************** >>>>> >>>>> Let's not spend our time and resources thinking about things that are >>>>> so >>>>> little or so large that all they really do for us is puff us up and >>>>> make us >>>>> feel like gods. We are mammals, and have not exhausted the annoying >>>>> little >>>>> problems of being mammals. >>>>> >>>>> -K. Mullis >>>>> >>>>> "A big computer, a complex algorithm and a long time does not equal >>>>> science." >>>>> >>>>> -Robert Gentleman >>>>> >>>>> >>>>> >>>> >>> >>> -- >>> Stephen Sefick >>> ************************************************** >>> Auburn University >>> Biological Sciences >>> 331 Funchess Hall >>> Auburn, Alabama >>> 36849 >>> ************************************************** >>> sas0...@auburn.edu >>> http://www.auburn.edu/~sas0025 >>> ************************************************** >>> >>> Let's not spend our time and resources thinking about things that are so >>> little or so large that all they really do for us is puff us up and make >>> us >>> feel like gods. We are mammals, and have not exhausted the annoying >>> little >>> problems of being mammals. >>> >>> -K. Mullis >>> >>> "A big computer, a complex algorithm and a long time does not equal >>> science." >>> >>> -Robert Gentleman >>> >>> >>> >> [[alternative HTML version deleted]] >> >> ______________________________________________ >> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide >> http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> > > --------------------------------------------------------------------------- > Jeff Newmiller The ..... ..... Go Live... > DCN:<jdnew...@dcn.davis.ca.us> Basics: ##.#. ##.#. Live > Go... > Live: OO#.. Dead: OO#.. Playing > Research Engineer (Solar/Batteries O.O#. #.O#. with > /Software/Embedded Controllers) .OO#. .OO#. rocks...1k > --------------------------------------------------------------------------- > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.