Dear all,
I am writing you this email because i need your help and I will really
appreciate if you can dedicate some minutes of your time in helping me.
I'm trying to use the R genetics package for a Linkage Disequilibrium
analysis of data matrix obtained from a RADseq protocol (Stacks software).
After several filtration steps, i'm currently working on a matrix of
approximately 3000 SNPs (100 samples). I'm having some issues in
understanding which type of input file should i run. I have found something
related to the genlight format but i really don't understand how can i
convert my genepop file into this new format.
Can anyone please tell me if i'm working on the right direction and how can
i convert my file?
Thank you very much for your time!
Best regards,
Giulia
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