FAQ 7.22 You must print a ggplot object, for example with print(m52.2cluster)
For the FAQ, run the line system.file("../../doc/FAQ") in R on your computer. Open up the resulting filepath in your favorite editor and scroll down to 7.22 On Sun, Jan 14, 2018 at 4:21 PM, Ding, Yuan Chun <ycd...@coh.org> wrote: > Hi Bert, > > I am sorry to bother you on weekend. > > I am still struggling on defining a correct function. > > I first defined the function RFS (see below), then run it by provide the two > argument. > > m52.2cluster <-RFS(inputfile =allinfo_m52, N=2 ) > > I do not get error message, but no figure displays on screen. I do not know > what is going on. > > Can you help me a little more on this issue? > > Thank you, > > Ding > > # function to generate RFS > RFS <- function( inputfile, N ) { > cluster<- survfit(Surv(RFS_days2, OV_Had_a_Recurrence_CODE) ~ clusters, > data = inputfile) > > if( N==2) {palette <- c("red", "black") > legend.labs <- c("Cluster1", "Cluster2") > } > > else if(N==3) {palette <- c("red", "black", "green") > legend.labs <- c("Cluster1", "Cluster2", "Cluster3") > } > > else {palette <- c("red", "black","green", "blue") > legend.labs <- c("Cluster1", "Cluster2", > "Cluster3", "Cluster4") > } > > ggsurvplot(cluster, data = inputfile, risk.table = F, > palette = palette, > ylim=c(0,1),ggtheme = theme_bw(),xlab="Relapse Free Suvival > (Days)", > main = "Survival curve",pval = TRUE,font.x = 16,font.y = 16, > font.tickslab = 14,font.legend =c(14,"plain","black"), > legend = "bottom", > legend.title = "Tree Cluster", > legend.labs = legend.labs, > lty=1, lwd=3) > } > > From: Bert Gunter [mailto:bgunter.4...@gmail.com] > Sent: Sunday, January 14, 2018 9:50 AM > To: Ding, Yuan Chun <ycd...@coh.org> > Subject: Re: [R] consolidate three function into one > > I have not looked at your code *at all*, so I am not sure what exactly you > mean by "consolidate." > Is this what you are after? > > f1 <- function(...) { code 1} > f2 <- function(...) { code 2} > f3 <- function(...) { code 3} > ## can be "consolidated as": > f <- function( someargs, ...){ > if( expr(someargs)) f1(...) > else if(expr2(someargs)) f2(...) > else f3(...) > } > The "..." argument to f can soak up any named additional arguments you wish > to pass to f1, f2, or f3. > My apologies if this is offbase or too vague, and feel free to ignore in that > case. I don't have the patience to go trough your code in detail. Others may > and give you what you want. > Cheers, > Bert > > > > Bert Gunter > > "The trouble with having an open mind is that people keep coming along and > sticking things into it." > -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) > > On Sun, Jan 14, 2018 at 9:17 AM, Ding, Yuan Chun > <ycd...@coh.org<mailto:ycd...@coh.org>> wrote: > HI R users, > > I construct dendrogram tree and cut the tree into different clusters, then > generate survival curves by the following three functions. All variables are > included in an inputfile. > > Can you help me to consolidate the following three function into one > functions? I thought about using if else function, but not sure how to do > it. > > Thank you, > > Ding > > # function to generate RFS > RFS2cluster <- function( inputfile ) { > cluster2<- survfit(Surv(RFS_days, OV_Had_a_Recurrence_CODE) ~ clusters, > data = inputfile) > > ggsurvplot(cluster2, data = inputfile, risk.table = F, > palette = c("red", "black"), > ylim=c(0,1), > ggtheme = theme_bw(), > xlab="Relapse Free Suvival (Days)", > main = "Survival curve", > pval = TRUE, > font.x = 16, > font.y = 16, > font.tickslab = 14, > font.legend =c(14,"plain","black"), > legend = "bottom", > legend.title = "Tree Cluster", > legend.labs = c("Cluster1", "Cluster2"), lty=1, lwd=3) > } > > RFS3cluster <- function( inputfile ) { > cluster3<- survfit(Surv(RFS_days, OV_Had_a_Recurrence_CODE) ~ clusters, > data = inputfile) > > ggsurvplot(cluster3, data = inputfile, risk.table = F, > palette = c("red", "black", "green"), > ylim=c(0,1), > ggtheme = theme_bw(), > xlab="Relapse Free Suvival (Days)", > main = "Survival curve", > pval = TRUE, > font.x = 16, > font.y = 16, > font.tickslab = 14, > font.legend =c(14,"plain","black"), > legend = "bottom", > legend.title = "Tree Cluster", > legend.labs = c("Cluster1", "Cluster2", "Cluster3"), lty=1, > lwd=3) > } > > RFS4cluster <- function( inputfile ) { > cluster4<- survfit(Surv(RFS_days, OV_Had_a_Recurrence_CODE) ~ clusters, > data = inputfile) > > ggsurvplot(cluster4, data = inputfile, risk.table = F, > palette = c("red", "black", "green", "blue"), > ylim=c(0,1), > ggtheme = theme_bw(), > xlab="Relapse Free Suvival (Days)", > main = "Survival curve", > pval = TRUE, > font.x = 16, > font.y = 16, > font.tickslab = 14, > font.legend =c(14,"plain","black"), > legend = "bottom", > legend.title = "Tree Cluster", > legend.labs = c("Cluster1", "Cluster2", "Cluster3", "Cluster4"), > lty=1, lwd=3) > } > > -----Original Message----- > From: R-help > [mailto:r-help-boun...@r-project.org<mailto:r-help-boun...@r-project.org>] On > Behalf Of imane hajar > Sent: Friday, January 12, 2018 7:42 AM > To: r-help@r-project.org<mailto:r-help@r-project.org> > Subject: [R] Help with packages (methods, stats, stats4) > > [Attention: This email came from an external source. Do not open attachments > or click on links from unknown senders or unexpected emails.] > > > > > > hello, > Can you please give me a hand with this problem,well i can't install these > packages: > - stats > - methods > - stats4 > > when i tried the following command : *library(help = "stats") * , it gave me > this output (*see picture*), so i contacted the Maintainer of the package at > (*r-c...@r-project.org<mailto:r-c...@r-project.org> > <r-c...@r-project.org<mailto:r-c...@r-project.org>>*) but he said that i > write to the wrong place. > > (i want to install those packages in order to use the "DVstats" package) > > (i have the latest version of R (3.4.3 ) and Rstudio(1.2.240) ) > > thank you > Regards > > > --------------------------------------------------------------------- > -SECURITY/CONFIDENTIALITY WARNING- > This message (and any attachments) are intended solely for the individual or > entity to which they are addressed. 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