Hi Yuan, The package named "Enmix" is maintained on Bioconductor. It seems to be specific to particular lab equipment and so all I can advise is:
1) Try your question on the Bioconductor help list 2) If no help there contact Zongli Xu (the maintainer) Jim On Thu, Nov 12, 2020 at 11:40 AM Yuan Chun Ding <ycd...@coh.org> wrote: > > Hi All, > > I am very sorry to bother you. > > This week, I updated my R from 3.5.3 to 4.0.3, reinstalled all required R > packages and reran the following R code; then got the following error: > could not find function "ComBat.mc". > > > #' firstly Removing chip-well batch effects using ComBat from the sva > package > > # First we convert from beta-values to M-values > > Mvals1 <- log2(betas.rcp)-log2(1-betas.rcp) > > #' ComBat eBayes adjustment using a known variable of interest (here we > use row) > > Mvals.ComBat1 <- ComBat.mc(Mvals1, batch = pData(WB.noob)$Array,nCores = > detectCores()-1) > Error in ComBat.mc(Mvals1, batch = pData(WB.noob)$Array, nCores = > detectCores() - : > could not find function "ComBat.mc" > > I have successfully run the same R code with same data sets several times > since 2017. Google searching tells me that this ComBat.mc function is from > an R package "Enmix". When typing library(Enmix), no error message, so the > Enmix library is installed. Can you tell me why I got this error after > updating to new R version? > > Thank you, > > Yuan Chun Ding > > ---------------------------------------------------------------------- > ------------------------------------------------------------ > -SECURITY/CONFIDENTIALITY WARNING- > > This message and any attachments are intended solely for the individual or > entity to which they are addressed. This communication may contain > information that is privileged, confidential, or exempt from disclosure > under applicable law (e.g., personal health information, research data, > financial information). Because this e-mail has been sent without > encryption, individuals other than the intended recipient may be able to > view the information, forward it to others or tamper with the information > without the knowledge or consent of the sender. If you are not the intended > recipient, or the employee or person responsible for delivering the message > to the intended recipient, any dissemination, distribution or copying of > the communication is strictly prohibited. If you received the communication > in error, please notify the sender immediately by replying to this message > and deleting the message and any accompanying files from your system. If, > due to the security risks, you do not wish to receive further > communications via e-mail, please reply to this message and inform the > sender that you do not wish to receive further e-mail from the sender. > (LCP301) > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.