Warning: I have basically no idea what you are doing. I presume that you
have consulted ?svg, however. If not , you should probably do so.
Also, a search on "save as svg" on rseek.org brought up the svglite
package, among other resources. You might want to see what that offers.
Cheers,
Bert Gunter
"The trouble with having an open mind is that people keep coming along and
sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
On Thu, Dec 3, 2020 at 7:12 PM Anas Jamshed <anasjamshed1...@gmail.com>
wrote:
> #Loading the required libraries
> library(ape)
> library(phangorn)
> library(seqinr)
> #Importing the required file
> align_5 <- read.alignment("C:/Users/VAMSI/align 5.fasta", format = "fast")
> align_119 <- read.alignment("C:/Users/VAMSI/align 119.fasta", format =
> "fasta")
> Computing the distance matrix for both UPGMA and NJ algorithms
> implementation.
> matrix_5x5 <- dist.alignment(align_5, matrix = "identity")
> summary(matrix_5x5)
>
> matrix_119x119 <- dist.alignment(align_119, matrix = "identity")
> summary(matrix_119x119)
> #Implementation of UPGMA algorithm for a small matrix (5x5) and entire
> matrix (119x119)
> UPGMA_5x5 <- upgma(matrix_5x5)
> UPGMA_119x119 <- upgma(matrix_119x119)
> summary(UPGMA_5x5)
>
> summary(UPGMA_119x119)
> #Implementation of NJ algorithm for a small matrix (5x5) and entire
> matrix (119x119)
> NJ_5x5 <- NJ(matrix_5x5)
> NJ_119x119 <- NJ(matrix_119x119)
> summary(NJ_5x5)
>
> summary(NJ_119x119)
>
>
> I have done this whole analysis but don't know how can I the save my
> tree file in svg or some other image format
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
[[alternative HTML version deleted]]
______________________________________________
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
