On 25/04/2021 10:52 a.m., Larry Johnson wrote:
Hi. Short version. tidyverse disappeared from my packages, and won't install.
The initial failure stated I had an outdated broom package, but updates are
failing too, not just on broom, but on all packages, and there is no meaningful
error output on the installation failures.
I typically use RStudio on Fedora 33, but the problem I'm about to describe
occurs whether I use RStudio or the text version.
To give you overview, here is the output from sessionInfo:
sessionInfo()
R version 4.0.4 (2021-02-15)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: Fedora 33 (Workstation Edition)
Matrix products: default
BLAS/LAPACK: /usr/lib64/libflexiblas.so.3.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices datasets utils methods base
loaded via a namespace (and not attached):
[1] htmlwidgets_1.5.3 colorspace_2.0-0 scales_1.1.1 compiler_4.0.4
[5] magrittr_2.0.1 R6_2.5.0 leaflet_2.0.4.1
htmltools_0.5.1.1
[9] tools_4.0.4 crosstalk_1.1.1 digest_0.6.27
lifecycle_1.0.0
[13] munsell_0.5.0 rlang_0.4.10 CoprManager_0.3.7.1
After trying complete reinstalls of R, RStudio, and the CRAN repositories
here's the last error messages I've gotten in my attempts to install and load
tidyverse:
install.packages(c("broom", "callr", "cli", "cpp11", "dbplyr", "haven", "highr", "knitr", "pillar", "processx", "RcppArmadillo", "reprex",
"tibble", "tinytex", "vctrs", "viridis", "viridisLite", "withr"))
Install system packages...
install.packages("tidyverse")
Install system packages...
library(tidyverse)
Error: package or namespace load failed for ‘tidyverse’ in loadNamespace(j <-
i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
namespace ‘broom’ 0.7.5 is being loaded, but >= 0.7.6 is required
Attempts to install or update broom fail with no output.
I've been searching for similar reports of failure here in these archives, on
the RStudio forums, and on the internet and have found nothing that's a
seamless match. If I can't find anything I'll check out filing a bug report
(I've never done it with R before).
Any help with a starting point in diagnosing this will be appreciated.
Are you using install_github(), or otherwise installing non-CRAN
versions? If so, stop doing that. First, run update.packages(ask=FALSE)
to make sure you are up to date. Then delete any package that is newer
than the CRAN version, and reinstall it using the basic install.packages().
Here's code to compare versions:
CRAN <- available.packages()
here <- installed.packages()
for (i in seq_len(nrow(here))) {
if (here[i, "Package"] %in% rownames(CRAN) &&
package_version(here[i, "Version"]) >
package_version(CRAN[here[i, "Package"], "Version"]))
cat(here[i, c("Package", "Version")], "\n", sep=" " )
}
Duncan Murdoch
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