Dear R users, Package "Rogue" has been published on CRAN: https://CRAN.R-project.org/package=Rogue.
"Rogue" improves phylogenetic analysis by detecting wildcard taxa whose inconsistent position reduces split support and resolution in consensus trees. It implements an effective new information-theoretic approach (Smith 2022, https://doi.org/10.1093/sysbio/syab099), and provides an R interface to the established "RogueNaRok" C library (Aberer et al. 2013, https://doi.org/10.1093/sysbio/sys078). A vignette demonstrating use on Bayesian posterior tree sets can be found at https://cran.r-project.org/web/packages/Rogue/vignettes/Bayesian.html. Questions and bug reports are welcome at https://github.com/ms609/Rogue. Regards, Martin Smith -- *Dr. Martin R. Smith* Associate Professor in Palaeontology Durham University Department of Earth Sciences Mountjoy Site, South Road, Durham, DH1 3LE United Kingdom *M*: +44 (0)774 353 7510 *E*: martin.sm...@durham.ac.uk smithlabdurham.github.io twitter.com/PalaeoSmith The information in this e-mail and any attachments is co...{{dropped:7}} ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
