On RHEL 8 with GCC 11.2.0 loaded as a module in a non-standard location I'm the below error with make install. libgfortran.so is definitely in $LD_LIBRARY_PATH, i.e., /path/to/gcc-11.2/lib64
ls -l /path/to/gcc-11.2/lib64/*fortran.so* lrwxrwxrwx 1 rk3199 user 20 Mar 24 2022 libgfortran.so -> libgfortran.so.5.0.0 lrwxrwxrwx 1 rk3199 user 20 Mar 24 2022 libgfortran.so.5 -> libgfortran.so.5.0.0 -rwxr-xr-x 1 rk3199 user 8595744 Mar 24 2022 libgfortran.so.5.0.0 Here is where the error occurs in make install: [...] installing packages ... building HTML index ... /path/to/R-4.2.2/bin/exec/R: error while loading shared libraries: libgfortran.so.5: cannot open shared object file: No such file or directory make[2]: *** [install] Error 127 make[2]: Leaving directory `/path/to/R-4.2.2/src/library' make[1]: *** [install] Error 1 make[1]: Leaving directory `/path/to/rk3199/R-4.2.2/src' make: *** [install] Error 1 During make I see this error with Java: configuring Java ... Java interpreter : /usr/bin/java Java version : 1.8.0_161 Java home path : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.161-2.b14.el7.x86_64/jre Java compiler : not present Java headers gen.: Java archive tool: trying to compile and link a JNI program detected JNI cpp flags : detected JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm make[2]: Entering directory `/tmp/Rjavareconf.3sImDz' gcc -I"/path/to/R-4.2.2/include" -DNDEBUG -I/usr/local/include -fpic -O3 -march=native -c conftest.c -o conftest.o conftest.c:1:10: fatal error: jni.h: No such file or directory 1 | #include <jni.h> | ^~~~~~~ compilation terminated. make[2]: *** [conftest.o] Error 1 make[2]: Leaving directory `/tmp/Rjavareconf.3sImDz' Unable to compile a JNI program JAVA_HOME : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.161-2.b14.el7.x86_64/jre Java library path: JNI cpp flags : JNI linker flags : Updating Java configuration in /path/to/R-4.2.2 Done. That seems a little more straight forward in that our Java 1.7.0 nor 1.8.0 have a jni.h file. Looks like we'd need the devel package installed. Thanks for any suggestions for the former. [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.