Hi all,
I seem to be getting segfaults when attempting to build R 4.4.0 on RHEL 9.1
(5.14.0-162.23.1.el9_1.x86_64). Interestingly, it seems to build ok on Rocky
9.1 and 9.3. This is the trace:
make[3]: Entering directory '/home/esteva.m/R/R-4.4.0/src/library/grDevices'
building package 'grDevices'
make[4]: Entering directory '/home/esteva.m/R/R-4.4.0/src/library/grDevices'
all.R is unchanged
make[4]: Leaving directory '/home/esteva.m/R/R-4.4.0/src/library/grDevices'
make[4]: Entering directory '/home/esteva.m/R/R-4.4.0/src/library/grDevices'
make[5]: Entering directory '/home/esteva.m/R/R-4.4.0/src/library/grDevices/src'
make[6]: Entering directory '/home/esteva.m/R/R-4.4.0/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[7]: Entering directory
'/home/esteva.m/R/R-4.4.0/src/library/grDevices/src/cairo'
make[8]: Entering directory
'/home/esteva.m/R/R-4.4.0/src/library/grDevices/src/cairo'
make[9]: Entering directory
'/home/esteva.m/R/R-4.4.0/src/library/grDevices/src/cairo'
make[9]: 'cairo.so' is up to date.
make[9]: Leaving directory
'/home/esteva.m/R/R-4.4.0/src/library/grDevices/src/cairo'
make[8]: Leaving directory
'/home/esteva.m/R/R-4.4.0/src/library/grDevices/src/cairo'
make[7]: Leaving directory
'/home/esteva.m/R/R-4.4.0/src/library/grDevices/src/cairo'
make[6]: Leaving directory '/home/esteva.m/R/R-4.4.0/src/library/grDevices/src'
make[5]: Leaving directory '/home/esteva.m/R/R-4.4.0/src/library/grDevices/src'
make[4]: Leaving directory '/home/esteva.m/R/R-4.4.0/src/library/grDevices'
make[4]: Entering directory '/home/esteva.m/R/R-4.4.0/src/library/grDevices'
byte-compiling package 'grDevices'
*** caught segfault ***
address 0x1801fa8f70, cause 'memory not mapped'
Traceback:
1: solve.default(rgb)
2: solve(rgb)
3: drop(whitexyz %*% solve(rgb))
4: make.rgb(red = c(0.625, 0.34), green = c(0.28, 0.595), blue = c(0.155,
0.07), gamma = 1.8, white = "D65", name = "Apple RGB")
5: eval(exprs[i], envir)
6: eval(exprs[i], envir)
7: sys.source(codeFile, env, keep.source = keep.source, keep.parse.data =
keep.parse.data)
8: doTryCatch(return(expr), name, parentenv, handler)
9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
10: tryCatchList(expr, classes, parentenv, handlers)
11: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))
call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L)
prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <-
strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type =
"w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L +
nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if
(w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <-
"Error : " msg <- paste0(prefix, conditionMessage(e), "\n")
.Internal(seterrmessage(msg[1L])) if (!silent &&
isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile)
.Internal(printDeferredWarnings()) } invisible(structure(msg, class =
"try-error", condition = e))})
12: try(sys.source(codeFile, env, keep.source = keep.source, keep.parse.data =
keep.parse.data))
13: loadNamespace(package = package, lib.loc = lib.loc, keep.source =
keep.source, keep.parse.data = keep.parse.data, partial = TRUE)
14: withCallingHandlers(expr, packageStartupMessage = function(c)
tryInvokeRestart("muffleMessage"))
15: suppressPackageStartupMessages(loadNamespace(package = package, lib.loc
= lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data,
partial = TRUE))
16: code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source,
keep.parse.data = keep.parse.data, compress = compress, set.install.dir =
set.install.dir)
17: tools:::makeLazyLoading("grDevices")
An irrecoverable exception occurred. R is aborting now ...
make[4]: *** [../../../share/make/lazycomp.mk:9:
../../../library/grDevices/R/grDevices.rdb] Error 139
make[4]: Leaving directory '/home/esteva.m/R/R-4.4.0/src/library/grDevices'
make[3]: *** [Makefile:28: all] Error 2
make[3]: Leaving directory '/home/esteva.m/R/R-4.4.0/src/library/grDevices'
make[2]: *** [Makefile:39: R] Error 1
make[2]: Leaving directory '/home/esteva.m/R/R-4.4.0/src/library'
make[1]: *** [Makefile:28: R] Error 1
make[1]: Leaving directory '/home/esteva.m/R/R-4.4.0/src'
make: *** [Makefile:62: R] Error 1
Has anyone run into this?
cairo-1.17.4-7.el9.x86_64
cairo-gobject-1.17.4-7.el9.x86_64
cairo-devel-1.17.4-7.el9.x86_64
cairo-gobject-devel-1.17.4-7.el9.x86_64
pango-1.48.7-3.el9.x86_64
pango-devel-1.48.7-3.el9.x86_64
Cheers,
Miguel Esteva
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