I feel there is something wrong in definition in weighted variance. Say for a fair dice the variance of outcome should be : 2.92 ( http://en.wikipedia.org/wiki/Variance)
However if I use cov.wt() or weighted.var() by Gavin, I get : cov.wt(as.data.frame(1:6), rep(0.6, 6)) $cov 1:6 1:6 3.5 $center 1:6 3.5 $n.obs [1] 6 $wt [1] 0.1666667 0.1666667 0.1666667 0.1666667 0.1666667 0.1666667 i.e. 3.5 Therefore if I want to calculate Variance for a r.v. with different prob for different values then should not use those formulae. Is it the case? On Sun, Jul 27, 2008 at 2:30 PM, Patrick Burns <[EMAIL PROTECTED]>wrote: > Have you seen 'cov.wt'? > > > Patrick Burns > [EMAIL PROTECTED] > +44 (0)20 8525 0696 > http://www.burns-stat.com > (home of S Poetry and "A Guide for the Unwilling S User") > > Arun Kumar Saha wrote: > >> ur prog gives following result: >> >> weighted.var(c(1,-1), c(0.5,0.5)) >> [1] 2 >> >> is it ok? >> >> On Thu, Jul 24, 2008 at 7:57 PM, Gavin Simpson <[EMAIL PROTECTED] >> >wrote: >> >> >> >>> On Thu, 2008-07-24 at 02:25 +0530, Arun Kumar Saha wrote: >>> >>> >>>> There is a R function to calculate weighted mean : weighted.mean() under >>>> stats package. Is there any direct R function for calculating weighted >>>> variance as well? >>>> >>>> >>> Here are two ways; weighted.var() is via the usual formula and >>> weighted.var2() uses a running sums approach. The formulae for which are >>> both on the weighted mean entry page on wikipedia for example. >>> >>> The removal of NA is as per weighted.mean, but I have not included any >>> of the sanity checks that that functions contains. >>> >>> weighted.var <- function(x, w, na.rm = FALSE) { >>> if (na.rm) { >>> w <- w[i <- !is.na(x)] >>> x <- x[i] >>> } >>> sum.w <- sum(w) >>> sum.w2 <- sum(w^2) >>> mean.w <- sum(x * w) / sum(w) >>> (sum.w / (sum.w^2 - sum.w2)) * sum(w * (x - mean.w)^2, na.rm = >>> na.rm) >>> } >>> >>> weighted.var2 <- function(x, w, na.rm = FALSE) { >>> if (na.rm) { >>> w <- w[i <- !is.na(x)] >>> x <- x[i] >>> } >>> sum.w <- sum(w) >>> (sum(w*x^2) * sum.w - sum(w*x)^2) / (sum.w^2 - sum(w^2)) >>> } >>> >>> ## from example section in ?weighted.mean >>> ## GPA from Siegel 1994 >>> wt <- c(5, 5, 4, 1)/15 >>> x <- c(3.7,3.3,3.5,2.8) >>> weighted.mean(x,wt) >>> >>> weighted.var(x, wt) >>> >>> weighted.var2(x, wt) >>> >>> And some timings: >>> >>> >>> >>>> system.time(replicate(100000, weighted.var(x, wt))) >>>> >>>> >>> user system elapsed >>> 2.679 0.014 2.820 >>> >>> >>>> system.time(replicate(100000, weighted.var2(x, wt))) >>>> >>>> >>> user system elapsed >>> 2.224 0.010 2.315 >>> >>> HTH >>> >>> G >>> -- >>> %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% >>> Dr. Gavin Simpson [t] +44 (0)20 7679 0522 >>> ECRC, UCL Geography, [f] +44 (0)20 7679 0565 >>> Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk >>> Gower Street, London [w] >>> http://www.ucl.ac.uk/~ucfagls/<http://www.ucl.ac.uk/%7Eucfagls/> >>> <http://www.ucl.ac.uk/%7Eucfagls/> >>> UK. WC1E 6BT. [w] http://www.freshwaters.org.uk >>> %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% >>> >>> >>> >>> >> >> [[alternative HTML version deleted]] >> >> ______________________________________________ >> R-help@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide >> http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> >> >> >> > -- [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.