thanks. i noticed a syntax error. a missing semi colon.
any idea about the error below?
cc -I. -I../../../src/include -I../../../src/include -I/usr/local/
include -DHAVE_CONFIG_H -fPIC -g -O2 -c Rsock.c -o Rsock.o
/opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used
cc -I. -I../../../src/include -I../../../src/include -I/usr/local/
include -DHAVE_CONFIG_H -fPIC -g -O2 -c internet.c -o internet.o
/opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used
cc -I. -I../../../src/include -I../../../src/include -I/usr/local/
include -DHAVE_CONFIG_H -fPIC -g -O2 -c nanoftp.c -o nanoftp.o
/opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used
cc -I. -I../../../src/include -I../../../src/include -I/usr/local/
include -DHAVE_CONFIG_H -fPIC -g -O2 -c nanohttp.c -o nanohttp.o
/opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used
cc -I. -I../../../src/include -I../../../src/include -I/usr/local/
include -DHAVE_CONFIG_H -fPIC -g -O2 -c sock.c -o sock.o
/opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used
cc -I. -I../../../src/include -I../../../src/include -I/usr/local/
include -DHAVE_CONFIG_H -fPIC -g -O2 -c sockconn.c -o sockconn.o
/opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used
cc -shared -fPIC -L/usr/local/lib64 -o internet.so Rsock.o internet.o
nanoftp.o nanohttp.o sock.o sockconn.o
/opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used
/usr/bin/ld: /usr/lib64/libpthread.a(ptw-fcntl.o): relocation
R_X86_64_32 against `a local symbol' can not be used when making a
shared object; recompile with -fPIC
/usr/lib64/libpthread.a: could not read symbols: Bad value
make[4]: *** [internet.so] Error 2
jason
On 09/12/2008, at 4:50 PM, Prof Brian Ripley wrote:
Please try the R-patched.version of R (see the posting guide or the
FAQ).
That seems to be about an error in the R 2.8.0 sources that was
corrected in October, and only happens if you do not ask for X11
support (which most R users need, including it seems all the pre-
release testers).
On Tue, 9 Dec 2008, Jason Tan wrote:
Hi,
i'm trying to compile R on a Cray XT3 using pgi/7.2.1 - CNL
(compute node linux)
The R version is 2.8.0
this is the option
-enable-R-static-lib=yes
--disable-R-shlib
/* The latter is the default */
CPICFLAGS=fpic
FPICFLAGS=fpic
CXXPICFLAGS=fpic
SHLIB_LDFLAGS=shared
--with-x=no
SHLIB_CXXLDFLAGS=shared
--disable-BLAS-shlib
Do you really need to set all these? And are you sure you know the
correct values? ('-shared' is standard on Linux.)
CFLAGS="-g -O2 -Kieee"
FFLAGS="-g -O2 -Kieee"
CXXFLAGS="-g -O2 -Kieee"
FCFLAGS="-g -O2 -Kieee"
CC=cc
F77=ftn
CXX=CC
FC=ftn
R is now configured for x86_64-unknown-linux-gnu
Source directory: .
Installation directory: /lus/nid00036/jasont/R
C compiler: cc -g -O2 -Kieee
Fortran 77 compiler: ftn -g -O2 -Kieee
C++ compiler: CC -g -O2 -Kieee
Fortran 90/95 compiler: ftn -g -O2 -Kieee
Obj-C compiler: gcc -g -O2
Interfaces supported:
External libraries: readline
Additional capabilities: PNG, JPEG, iconv, MBCS, NLS
Options enabled: static R library, R profiling, Java
Recommended packages: yes
The error is :
cc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/
pcre -I. -I../../src/include -I../../src/include -I/usr/local/
include -DHAVE_CONFIG_H -g -O2 -Kieee -c pcre.c -o pcre.o
/opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used
PGC-W-0155-64-bit integral value truncated (/usr/include/wctype.h:
108)
PGC-W-0155-64-bit integral value truncated (/usr/include/wctype.h:
109)
PGC-W-0155-64-bit integral value truncated (/usr/include/wctype.h:
110)
PGC-W-0155-64-bit integral value truncated (/usr/include/wctype.h:
111)
PGC/x86-64 Linux 7.2-1: compilation completed with warnings
cc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/
pcre -I. -I../../src/include -I../../src/include -I/usr/local/
include -DHAVE_CONFIG_H -g -O2 -Kieee -c platform.c -o platform.o
/opt/cray/xt-asyncpe/1.2/bin/cc: INFO: linux target is being used
PGC-S-0037-Syntax error: Recovery attempted by deleting identifier
FALSE (platform.c: 1657)
PGC-S-0094-Illegal type conversion required (platform.c: 1661)
PGC/x86-64 Linux 7.2-1: compilation completed with severe errors
make[3]: *** [platform.o] Error 2
make[3]: Leaving directory `/lus/nid00036/jasont/R-2.8.0/src/main'
make[2]: *** [R] Error 2
make[2]: Leaving directory `/lus/nid00036/jasont/R-2.8.0/src/main'
make[1]: *** [R] Error 1
make[1]: Leaving directory `/lus/nid00036/jasont/R-2.8.0/src'
make: *** [R] Error 1
Jason Tan
Senior Computer Support Officer
Western Australian Supercomputer Program (WASP)
The University of Western Australia
M024
35 Stirling Highway
CRAWLEY WA 6009
Ph: +618 64888742
Fax: +618 6488 8088
Email: [EMAIL PROTECTED]
Web: www.wasp.uwa.edu.au
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Brian D. Ripley, [EMAIL PROTECTED]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
Jason Tan
Senior Computer Support Officer
Western Australian Supercomputer Program (WASP)
The University of Western Australia
M024
35 Stirling Highway
CRAWLEY WA 6009
Ph: +618 64888742
Fax: +618 6488 8088
Email: [EMAIL PROTECTED]
Web: www.wasp.uwa.edu.au
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
