Thanks for the tip. I'll start with rJava, and see if that easier
approach works.
On Mar 20, 2009, at 10:50 PM, Martin Morgan wrote:
Michael Kubovy <kub...@virginia.edu> writes:
Dear R-helpers,
I run R version 2.8.1 (2008-12-22) on i386-apple-darwin8.11.1
I would like to call R from Java. I downloaded SJava_0.69-0.tar.gz,
and then issued the command suggested on http://www.omegahat.org/
RSJava/ :
Others will point you to rJava
http://www.rforge.net/rJava/
which might well be a good solution for you; if you have reasons for
using SJava, then the currently maintained version is at
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SJava
accessible using 'svn' and the instructions at
http://wiki.fhcrc.org/bioc/SvnHowTo
It has not been tested recently on a mac...
% R INSTALL -c SJava_0.69-0.tar.gz
This should be
R CMD INSTALL --clean SJava_0.69-0.tar.gz
ARGUMENT 'INSTALL' __ignored__
WARNING: unknown option '-c'
ARGUMENT 'SJava_0.69-0.tar.gz' __ignored__
I then tried
% R CMD INSTALL SJava_0.69-0.tar.gz
* Installing to library '/Library/Frameworks/R.framework/Resources/
library'
* Installing *source* package 'SJava' ...
checking for java... /usr/bin/java
Java VM /usr/bin/java
checking for javah... no
you require the JDK (Java Development Kit), not just the JRE (Java
Runtime Environment); if you've got the right software installed, you
should be able to find the program 'javah' on your system.
Hope that helps,
Martin
Sorry. We can currently only configure this package for IBM,
Blackdown
or Sun's Java implementation
ERROR: configuration failed for package 'SJava'
** Removing '/Library/Frameworks/R.framework/Resources/library/SJava'
Can someone tell me what I'm doing wrong? Since this is a matter of
some urgency, I would be grateful if you also cc-ed my email address.
_____________________________
Professor Michael Kubovy
University of Virginia
Department of Psychology
Postal Address:
P.O.Box 400400, Charlottesville, VA 22904-4400
Express Parcels Address:
Gilmer Hall, Room 102, McCormick Road, Charlottesville, VA 22903
Office: B011; Phone: +1-434-982-4729
Lab: B019; Phone: +1-434-982-4751
WWW: http://www.people.virginia.edu/~mk9y/
Skype name: polyurinsane
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--
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109
Location: Arnold Building M2 B169
Phone: (206) 667-2793
______________________________________________
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
