Hi all,
I think the code to calculate the default value of the symbreaks
argument in the gplots::heatmap.2 function is wrong.
The documentation says symbreaks defaults to true if any negative
values are detected in the data passed in.
The relevant code in the parameter list of this function definition
(gplots 2.7.3) is this:
symbreaks = min(x < 0, na.rm = TRUE) || scale != "none"
When I'm pretty sure it should be:
symbreaks = min(x, na.rm = TRUE) < 0 || scale != "none"
Likewise for the symkey parameter.
Right?
Thanks,
-steve
--
Steve Lianoglou
Graduate Student: Computational Systems Biology
| Memorial Sloan-Kettering Cancer Center
| Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact
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