On Apr 14, 2010, at 11:19 PM, Bogdan Tanasa wrote:
Dear all,
please could you suggest any R functions or packages (or external
programs),
that
a. take as input a large number (> 10 000) of short 20-30 nt
sequences, and
do
sequence assembly, to reconstruct larger (extended) 30-50 sequences ?
b. take as input a larger number of sequences (100 000 - 1 mil) and
cluster
these
sequences in distinct classes based on the sequence similarity ?
Most of the discussion about genetics/omics applications occurs on the
BioConductor mailing list. You should definitely seek it out, get the
base installed and review their available online resources (before
sending your next message to the correct mailing list.
http://www.bioconductor.org/docs
--
David Winsemius, MD
West Hartford, CT
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