Hello, 

I'm trying to write code for a repeated measures ANOVA.  To put things in 
perspective, I'll describe my experiment (briefly).  I have a 2X2 factorial 
design with pH (5.5, 6.5) and local community (present, absent) as my treatments.  
I had plastic enclosures that I sampled across five weeks with the density of 
7 species acting as my response variables.  I'm analyzing one species at a 
time and doing Bonferonni corrections after the analysis.  I've attached an 
example of one of my data files showing the treatments and the change in density 
(of one species) over 5 weeks.  Hopefully someone can shed some light on this 
question: how to write a repeated measures ANOVA code in R?  Thanks.  Hope to 
hear soon.

Jessie Binks

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  bag     pH   community   W1      W2      W3      W4      W5
   1      5.5      w    5.65898911.31798   0       0       0
   2      5.5      w       0    11.31798   0       0       0
   3      5.5      w       0    11.3179816.97697   0       0
   4      5.5      w       0       0       0    5.658989   0
   5      5.5     w/o   5.65898911.31798   0       0       0
   6      5.5     w/o      0    11.31798   0       0       0
   7      5.5     w/o      0    11.3179816.97697   0       0
   8      5.5     w/o      0       0       0    5.658989   0
   9      6.5      w    45.2719150.9309 33.95394   0       0
   10     6.5      w    45.2719145.2719145.2719116.97697   0
   11     6.5      w    33.95394113.179839.6129328.2949511.31798
   12     6.5      w    226.3596905.4383469.6961565.8989831.8714
   13     6.5     w/o   33.9539479.2258584.8848445.2719133.95394
   14     6.5     w/o   107.5208181.087773.5668667.9078790.54383
   15     6.5     w/o   79.22585169.7697147.1337101.8618277.2905
   16     6.5     w/o   79.2258590.54383152.7927130.1568198.0646
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