without seeing the file its hard to tell but one possibility that comes to
mind is that there is a # character in your
file. read.table considers this a comment character.
use the argurment comment.char="" and see what happens...
On Wed, 13 Aug 2003, Dibakar Ray wrote:
> I am very new to R. I was trying to load some publicly available Expression
> data in to R.
> I used the following commands
> mydata<-read.table("dataALLAMLtrain.txt", header=TRUE, sep
> ="\t",row.names=NULL)
> It reads data without any error
> Now if I use
> edit(mydata)
> It shows only 3916 entries, whereas the actual file contains 7129 entries)
> My data is something like
> Gene Description Gene Accession
> Number 1 2 3 4 5 6 7 8 9
> 10 11 12 13 14 15 16 17 18 19 20
> 21 22 23 24 25 26 27 34 35 36
> 37 38 28 29 30 31 32 33
> AFFX-BioB-5_at (endogenous
> control) AFFX-BioB-5_at -214 -139 -76 -135 -106 -138 -72
> -413 5 -88 -165 -67 -92 -113 -107 -117 -476 -81
> -44 17 -144 -247 -74 -120 -81 -112 -273 -20
> 7 -213 -25 -72 -4 15 -318 -32 -124 -135
> So it seems R is truncating the data. How can I load the complete file?
> Thanks in advance
> Dibakar
>
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