The bioconductor project [1] might be of interest to you, and its mailing list [2] is probably more appropriate for your question.
[1] http://www.bioconductor.org [2] https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor HTH, Deepayan On Sunday 07 September 2003 12:28, Peter Hornbeck wrote: > I am just starting to use R and am wanting to use the cluster algorithm for > analyzing sequences of amino acids for similarities. The input will be > lists of short sequences of 8-15 amino acids. > > Let me give you a feel for the sort of data I am interested in. > > Amino acids can be classified by a number of different parameters: e.g., > charge and hydrophobicity. Each of these qualities could be described by a > numerical assignment: charge (perhaps as either 0 or 1), and hydrophobicity > (perhaps as a continuum from 0 to 1). The point of the analysis is to > cluster those sequences that have similar properties at different positions > along the sequence. > > My question is: is there a user group of biologists that may be able to > provide tips about how to proceed, or perhaps who already have developed > algorithms that can be applied/modified to the sort of analysis I need? > > Or does anyone have suggestions of other on-line resources that might be > helpful? > > Thanks, Peter > > Peter Hornbeck > Magnolia, MA > 01930 > (978) 5264867 > > ______________________________________________ > [EMAIL PROTECTED] mailing list > https://www.stat.math.ethz.ch/mailman/listinfo/r-help ______________________________________________ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help
