[R] RMySQL : Mac : bus error at dbConnect time

[Geoff Grimwood]

Any help on this will be greatly appreciated.

Regards

Geoff

Version 1.8.1 Patched (2004-01-15), ISBN 3-900051-00-3

>   library(RMySQL)
>   library(DBI)
>   drv<-dbDriver("MySQL")
> drv
<MySQLDriver:(5415)>
> dbConnect(drv,dbname="mysql",user="root",password="******")
Bus error
RMySQL 0.5-3
MySQL is working fine and is 4.0.17
R is fine apart from this
Mac OS 10.2.8, fink, et al (a big et al)
R built using

 ./configure --enable-R-shlib --with-blas=-framework vecLib 
--with-lapack

(It fails to build using ./configure with no options)

RMySQL installed using

setenv PKG_CPPFLAGS '-I/usr/local/mysql/include -I/sw/include/gnugetopt'
setenv PKG_LIBS '-L/usr/local/mysql/lib -lmysqlclient -lgnugetopt'
R CMD INSTALL --configure-args='--with-mysql-dir=/usr/local/mysql' 
RMySQL_0.5-3.tar.gz

[SIDLAW02:~geoff/heaven/src] root# mysql_config
Usage: /usr/local/mysql/bin/mysql_config [OPTIONS]
Options:
        --cflags         [-I/usr/local/mysql/include -O3 
-fno-omit-frame-pointer]
        --include        [-I/usr/local/mysql/include]
        --libs           [-L/usr/local/mysql/lib -lmysqlclient -lz -lm]
        --libs_r         [-L/usr/local/mysql/lib -lmysqlclient_r -lz 
-lm]
        --socket         [/tmp/mysql.sock]
        --port           [3306]
        --version        [4.0.17]
        --libmysqld-libs [-L/usr/local/mysql/lib -lmysqld -lz -lm]

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