On Mon, 11 Oct 2004, Ingmar Visser wrote:
Dear All,
When installing the Ruuid package (from Bioconductor) from sources on my MAC (OS X 10.3.5, R version 2.0.0) I get the following errors:
Yes. You need the "GLib" library (eg http://developer.gnome.org/doc/API/2.0/glib/glib-building.html). It needs pkg-config, and IIRC, pkg-config needs something else.
It's frustrating, but the process does terminate eventually.
The Bioconductor list may be more helpful
-thomas
m00245:~ ivisser$ R CMD INSTALL -l /Users/ivisser/Library/R/library/ /Users/ivisser/Desktop/Ruuid * Installing *source* package 'Ruuid' ... loading cache ./config.cache checking for glib-config... no checking how to run the C preprocessor... (cached) cc -E checking for /usr/include/unistd.h... (cached) yes creating ./config.status creating src/Makevars ** libs gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include/glib12 -DHAVE_UNISTD_H=1 -I/sw/include -I/usr/local/include -fno-common -g -O2 -c Rinit.c -o Rinit.o In file included from Ruuid.h:5, from Rinit.c:1: uuidP.h:24:18: glib.h: No such file or directory In file included from Ruuid.h:5, from Rinit.c:1: uuidP.h:36: error: parse error before "guint32" uuidP.h:36: warning: no semicolon at end of struct or union uuidP.h:37: warning: data definition has no type or storage class uuidP.h:38: error: parse error before "time_hi_and_version" uuidP.h:38: warning: data definition has no type or storage class uuidP.h:39: error: parse error before "clock_seq" uuidP.h:39: warning: data definition has no type or storage class uuidP.h:40: error: parse error before "node" uuidP.h:40: warning: data definition has no type or storage class uuidP.h:41: error: parse error before '}' token make: *** [Rinit.o] Error 1 ERROR: compilation failed for package 'Ruuid' ** Removing '/Users/ivisser/Library/R/library/Ruuid' ** Restoring previous '/Users/ivisser/Library/R/library/Ruuid' m00245:~ ivisser$
Any help is appreciated,
best, ingmar
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Thomas Lumley Assoc. Professor, Biostatistics [EMAIL PROTECTED] University of Washington, Seattle
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