I created a tex file following the example in the Sweave help which
produced the following files in my working directory.
Sweave-test-1-006.eps
Sweave-test-1-006.pdf
Sweave-test-1-007.eps
Sweave-test-1-007.pdf
Sweave-test-1.tex
When I run latex on this, I get a latex error, log file below. I am
running R 2.1.1 on Windows XP. I have installed "small MiKTeX" and I
have added "C:\Program Files\R\rw2011\share\texmf" to the roots of
MiKTex. The MiKTeX test ran fine after I installed it.
Any tips would be most appreciated.
This is e-TeX, Version 3.141592-2.2 (MiKTeX 2.4) (preloaded format=latex
2005.8.5) 6 AUG 2005 09:28
entering extended mode
**Sweave-test-1
(Sweave-test-1.tex
LaTeX2e <2003/12/01>
Babel <v3.8a> and hyphenation patterns for english, french, german,
ngerman, du
mylang, nohyphenation, loaded.
(C:\usr\texmf\tex\latex\base\article.cls
Document Class: article 2004/02/16 v1.4f Standard LaTeX document class
(C:\usr\texmf\tex\latex\base\size10.clo
File: size10.clo 2004/02/16 v1.4f Standard LaTeX file (size option)
)
[EMAIL PROTECTED]
[EMAIL PROTECTED]
[EMAIL PROTECTED]
[EMAIL PROTECTED]
[EMAIL PROTECTED]
[EMAIL PROTECTED]
[EMAIL PROTECTED]
[EMAIL PROTECTED]
\abovecaptionskip=\skip41
\belowcaptionskip=\skip42
\bibindent=\dimen102
)
(C:\usr\texmf\tex\latex\ltxmisc\a4wide.sty
Package: a4wide 1994/08/30
(C:\usr\texmf\tex\latex\ntgclass\a4.sty
Package: a4 1999/03/03 v1.2f A4 based page layout
))
! Missing \endcsname inserted.
<to be read again>
\protect
l.11 \begin
{document}
?
! Emergency stop.
<to be read again>
\protect
l.11 \begin
{document}
End of file on the terminal!
Here is how much of TeX's memory you used:
223 strings out of 95898
2212 string characters out of 1195177
46816 words of memory out of 1050593
3336 multiletter control sequences out of 35000
3640 words of font info for 14 fonts, out of 500000 for 1000
14 hyphenation exceptions out of 607
23i,0n,17p,117b,36s stack positions out of 1500i,500n,5000p,200000b,32768s
No pages of output.
\documentclass[a4paper]{article}
\title{A Test File}
\author{Friedrich Leisch}
\usepackage{a4wide}
\usepackage{C:/PROGRA~1/R/rw2011/share/texmf/Sweave}
\begin{document}
\maketitle
A simple example that will run in any S engine: The integers from 1 to
10 are
\begin{Schunk}
\begin{Soutput}
[1] 1 2 3 4 5 6 7 8 9 10
\end{Soutput}
\end{Schunk}
We can also emulate a simple calculator:
\begin{Schunk}
\begin{Sinput}
> 1 + 1
\end{Sinput}
\begin{Soutput}
[1] 2
\end{Soutput}
\begin{Sinput}
> 1 + pi
\end{Sinput}
\begin{Soutput}
[1] 4.141593
\end{Soutput}
\begin{Sinput}
> sin(pi/2)
\end{Sinput}
\begin{Soutput}
[1] 1
\end{Soutput}
\end{Schunk}
Now we look at Gaussian data:
\begin{Schunk}
\begin{Soutput}
[1] 1.0549825921 1.0338743287 1.3960748544 0.8442504660 -1.3844903806
[6] -0.1132289262 0.0340332855 0.0002775862 -1.0397650922 0.4255640780
[11] -0.0101131650 -0.9338368343 -0.8404841222 0.1815343256 -0.0655929025
[16] -0.6401327742 0.2787653149 -0.0940385332 -0.6531716561 -0.8501837369
\end{Soutput}
\begin{Soutput}
One Sample t-test
data: x
t = -0.4006, df = 19, p-value = 0.6932
alternative hypothesis: true mean is not equal to 0
95 percent confidence interval:
-0.4281708 0.2906027
sample estimates:
mean of x
-0.06878406
\end{Soutput}
\end{Schunk}
Note that we can easily integrate some numbers into standard text: The
third element of vector \texttt{x} is 1.39607485443702, the
$p$-value of the test is 0.69319. % $
Now we look at a summary of the famous iris data set, and we want to
see the commands in the code chunks. Note that the summary needs to
be \texttt{print()}ed explicitly, because eval would discard it otherwise. I
consider this a feature, because it allows for much finer control on
what gets into the final report.
% the following code is R-specific, as data(iris) will not run in Splus.
% Hence, we mark it as R code.
\begin{Schunk}
\begin{Sinput}
> data(iris)
> print(summary(iris))
\end{Sinput}
\begin{Soutput}
Sepal.Length Sepal.Width Petal.Length Petal.Width
Min. :4.300 Min. :2.000 Min. :1.000 Min. :0.100
1st Qu.:5.100 1st Qu.:2.800 1st Qu.:1.600 1st Qu.:0.300
Median :5.800 Median :3.000 Median :4.350 Median :1.300
Mean :5.843 Mean :3.057 Mean :3.758 Mean :1.199
3rd Qu.:6.400 3rd Qu.:3.300 3rd Qu.:5.100 3rd Qu.:1.800
Max. :7.900 Max. :4.400 Max. :6.900 Max. :2.500
Species
setosa :50
versicolor:50
virginica :50
\end{Soutput}
\end{Schunk}
\begin{figure}[htbp]
\begin{center}
\begin{Schunk}
\begin{Sinput}
> library(graphics)
> pairs(iris)
\end{Sinput}
\end{Schunk}
\includegraphics{Sweave-test-1-006}
\caption{Pairs plot of the iris data.}
\end{center}
\end{figure}
\begin{figure}[htbp]
\begin{center}
\begin{Schunk}
\begin{Sinput}
> boxplot(Sepal.Length ~ Species, data = iris)
\end{Sinput}
\end{Schunk}
\includegraphics{Sweave-test-1-007}
\caption{Boxplot of sepal length grouped by species.}
\end{center}
\end{figure}
% R is not S-PLUS, hence this chunk will be ignored:
\end{document}
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