On 10/19/2005 8:37 AM, David Ruau wrote: > Hi, > I discover that when I save a workspace containing a genefilter (pkg > from Bioconductor) object I cannot open no more after. I have to > restore the .RData file from a backup to be able to start R again. > I didn't upgrade to Version 2.2 but I'm not sure that it will solve the > problem. > Did anyone have encounter the same problem? > Below is a short r session to reproduce the error: > ... > [Previously saved workspace restored] > > > library(genefilter) > Loading required package: Biobase > Loading required package: tools > Welcome to Bioconductor > Vignettes contain introductory material. To view, > simply type: openVignette() > For details on reading vignettes, see > the openVignette help page. > Loading required package: survival > Loading required package: splines > > f1 <- kOverA(5, 60) > > q() > Save workspace image? [y/n/c]: y > [computer:admin]$ r > > R : Copyright 2005, The R Foundation for Statistical Computing > Version 2.1.1 (2005-06-20), ISBN 3-900051-07-0 > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for a HTML browser interface to help. > Type 'q()' to quit R. > > Error in .initContents() : couldn't find function "isGeneric" > Error: .onLoad failed in 'loadNamespace' for 'Biobase' > Fatal error: unable to restore saved data in .RData
Looks like it might be a bug in Biobase. I'd first confirm that it happens in a current release of R, then post again to the Bioconductor list. Duncan Murdoch ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
