Have you considered the Bioconductor project (www.bioconductor.org)?
If you are not already familiar with their capabilities, I suggest you
review their capabilities and consider posting a question to their
listserve if you don't find the answer without that.
hope this helps.
spencer graves
Erez Shabo wrote:
> Hello all,
>
> I'm trying to calculate the Maximum likelihood of individuals to get the
> ancestry.
> I mixd 3 populations 15 generations in proportion of 20% 20% 60% when each
> population
> sorce have diferent genome (0 1 and 2) with frequencies for each one.
> So now i have individuals looks like 0 0 2 1 1 2 0 ..... and i don't now how
> to calculate the
> mle although i try to figure out from the package state4.
> can somebody help me please?
>
> Thanks
>
> [[alternative HTML version deleted]]
>
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