anuel Morales wrote: > As far as I can figure out, the problem with running "LinBUGS" on FC5 is > that support for linuxthreads was removed after being deprecated in FC4. > > http://fedora.redhat.com/docs/release-notes/fc5/#id2887615 > > As a result, the LD_ASSUME_KERNEL workaround, which presumably forced > the use of linuxthreads (see > http://www.math.helsinki.fi/openbugs/phpBB2/viewtopic.php?t=4), doesn't > work anymore. > > Ideally, bugs.so / brugs.so would be compiled with support for NPTL > instead of linuxthreads, but I don't think it's possible to do this as > an end user. Unless changes are made by the OpenBUGS developers, > OpenBUGS will not run natively in FC5.
The person who really knows is Andrew Thomas (CCing now). Why do people not ask him rather than speculating? Uwe Ligges > Manuel > > On Mon, 2006-05-01 at 13:38 -0500, Paul Johnson wrote: > >>Dear Jun: >> >>How about telling us which version of Linux you use and how you make >>linbugs run? As far as I can tell, the OpenBUGS people have >>intentionally removed linbugs from their version 2.2. That leaves us >>with various scripts that people have posted & tried, none work for >>me. Fedora Core 5, I cannot get any of the linbugs scripts that are >>floating around to work. >> >>I tried re-building the program thus: >> >> >># gcc -o cbugs CBugs.c -ldl >> >>That creates an executable cbugs, but there is no joy for me. >> >>$ ./cbugs >>failed to install signal >>32 >>failed to install signal >>33 >> >>**** >>* BlackBox >>* illegal memory read [ad = 00000000] >>- HostFiles.NewFileRef (pc=00000D9B, fp=BFC73BE4) >>- HostFiles.OpenFile (pc=00000E0E, fp=BFC73BFC) >>- HostFiles.Directory.Old (pc=000029B2, fp=BFC73EA4) >>- StdLoader.ThisObjFile (pc=0000031D, fp=BFC744C0) >>- StdLoader.ReadHeader (pc=0000075F, fp=BFC746E0) >>- StdLoader.LoadMod (pc=0000107B, fp=BFC747F8) >>- StdLoader.LoadMod (pc=000011E0, fp=BFC74910) >>- StdLoader.LoadMod (pc=000011E0, fp=BFC74A28) >>- StdLoader.Hook.ThisMod (pc=00001355, fp=BFC74A3C) >>- Kernel.ThisMod (pc=00001224, fp=BFC74B58) >>- Init.Init (pc=0000004B, fp=BFC74B70) >>- Init.$$ (pc=0000000A, fp=BFC74B80) >>**** >> >> >> >># export LD_ASSUME_KERNEL=2.4.1 >> >> >># ./cbugs >>./cbugs: error while loading shared libraries: libdl.so.2: cannot open >>shared object file: No such file or directory >> >>$ ldd ./cbugs >> linux-gate.so.1 => (0x00a2b000) >> libdl.so.2 => /lib/libdl.so.2 (0x00ba9000) >> libc.so.6 => /lib/libc.so.6 (0x00a4d000) >> /lib/ld-linux.so.2 (0x00a2c000) >> >>And after doing that LD_ASSUME_KERNEL thingie, nothing in the shell >>works anymore... >> >>$ which cbugs >>/usr/bin/which: error while loading shared libraries: libc.so.6: >>cannot open shared object file: No such file or directory >> >>On 5/1/06, jun yan <[EMAIL PROTECTED]> wrote: >> >>>I have used linbugs with the rbugs package for a recent work. It might be >>>worthwhile trying. >>> >>> Jun ______________________________________________ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html