Hi Peter, This is mine:
AR = ar BLAS_LIBS = C_VISIBILITY = -fvisibility=hidden CC = gcc CFLAGS = -g -O2 -std=gnu99 CPICFLAGS = -fpic CPPFLAGS = -I/usr/local/include CXX = g++ CXXCPP = g++ -E CXXFLAGS = -g -O2 CXXPICFLAGS = -fpic DYLIB_EXT = .so DYLIB_LD = gcc DYLIB_LDFLAGS = -shared DYLIB_LINK = $(DYLIB_LD) $(DYLIB_LDFLAGS) $(LDFLAGS) ECHO_C = ECHO_N = -n ECHO_T = F77 = gfortran F77_VISIBILITY = -fvisibility=hidden FC = f95 FCFLAGS = -g -O2 FFLAGS = -g -O2 FLIBS = -lgfortran -lm -lgcc_s FCPICFLAGS = -fpic FPICFLAGS = -fpic JAVA = /usr/bin/java JAVA_HOME = /usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre JAVA_LD_LIBRARY_PATH = JAVA_LIBS = -L -ljvm LAPACK_LIBS = -L$(R_HOME)/lib$(R_ARCH) -lRlapack LIBM = -lm LIBR = LIBS = -ldl -lm LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool LDFLAGS = -L/usr/local/lib64 R_ARCH = RANLIB = ranlib SAFE_FFLAGS = -g -O2 -ffloat-store SED = /bin/sed SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = g++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = .so SHLIB_FCLD = f95 SHLIB_FCLDFLAGS = -shared SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) TCLTK_CPPFLAGS = TCLTK_LIBS = On 02 May 2006 08:51:21 +0200, Peter Dalgaard <[EMAIL PROTECTED]> wrote: > "Wuming Gong" <[EMAIL PROTECTED]> writes: > > > Dear Peter, > > > > $ uname -a > > Linux bl3 2.6.15-1.1833_FC4smp #1 SMP Wed Mar 1 23:55:52 EST 2006 > > x86_64 x86_64 x86_64 GNU/Linux > > > > When ./configure, I did not claim any options... > > > > Wuming > > Hm. Which are your compilers? I have (in etc/Makeconf). > > AR = ar > BLAS_LIBS = > C_VISIBILITY = -fvisibility=hidden > CC = gcc > CFLAGS = -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m64 > -mtune=nocona > CPICFLAGS = -fpic > CPPFLAGS = -I/usr/local/include > CXX = g++ > CXXCPP = g++ -E > CXXFLAGS = -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m64 > -mtune=nocona > CXXPICFLAGS = -fpic > DYLIB_EXT = .so > DYLIB_LD = gcc > DYLIB_LDFLAGS = -shared > DYLIB_LINK = $(DYLIB_LD) $(DYLIB_LDFLAGS) $(LDFLAGS) > ECHO_C = > ECHO_N = -n > ECHO_T = > F77 = gfortran > F77_VISIBILITY = -fvisibility=hidden > FC = f95 > FCFLAGS = -g -O2 > FFLAGS = -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m64 > -mtune=nocona > FLIBS = -lgfortran -lm -lgcc_s > FCPICFLAGS = -fpic > FPICFLAGS = -fpic > JAVA = /usr/bin/java > JAVA_HOME = /usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre > JAVA_LD_LIBRARY_PATH = > JAVA_LIBS = -L -ljvm > LAPACK_LIBS = -L$(R_HOME)/lib$(R_ARCH) -lRlapack > LIBM = -lm > LIBR = > LIBS = -ldl -lm > LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool > LDFLAGS = -L/usr/local/lib64 > R_ARCH = > RANLIB = ranlib > SAFE_FFLAGS = -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m64 > -mtune=nocona -ffloat-store > SED = /bin/sed > SHELL = /bin/sh > SHLIB_CFLAGS = > SHLIB_CXXFLAGS = > SHLIB_CXXLD = g++ > SHLIB_CXXLDFLAGS = -shared > SHLIB_EXT = .so > SHLIB_FCLD = f95 > SHLIB_FCLDFLAGS = -shared > SHLIB_FFLAGS = > SHLIB_LD = gcc > SHLIB_LDFLAGS = -shared > SHLIB_LIBADD = > SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) > TCLTK_CPPFLAGS = -I/usr/include -I/usr/include -I/usr/X11R6/include > TCLTK_LIBS = -L/usr/lib64 -ltcl8.4 -L/usr/lib64 -ltk8.4 > -L/usr/X11R6/lib64 -lX11 > > > > On 01 May 2006 19:30:48 +0200, Peter Dalgaard <[EMAIL PROTECTED]> wrote: > > > "Wuming Gong" <[EMAIL PROTECTED]> writes: > > > > > > > Dear list, > > > > > > > > When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: > > > > > > > > make[3]: Entering directory > > > > `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' > > > > gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o > > > > CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o > > > > arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o > > > > character.o coerce.o colors.o complex.o connections.o context.o cov.o > > > > cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o > > > > dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o > > > > fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o > > > > iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o > > > > match.o memory.o model.o names.o objects.o optim.o optimize.o > > > > options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o > > > > print.o printarray.o printvector.o printutils.o qsort.o random.o > > > > regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o > > > > serialize.o size.o sort.o source.o split.o sprintf.o startup.o > > > > subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o > > > > version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a > > > > ../nmath/libnmath.a -lgfortran -lm -lgcc_s ../extra/zlib/libz.a > > > > ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a -lreadline -lncurses > > > > -ldl -lm > > > > ../appl/libappl.a(cmplxblas.o)(.text+0x1100a): In function `zrotg_': > > > > /project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5579: > > > > undefined reference to `z_abs' > > > > ../appl/libappl.a(cmplxblas.o)(.text+0x11069):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5585: > > > > undefined reference to `z_abs' > > > > ../appl/libappl.a(cmplxblas.o)(.text+0x11079):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5585: > > > > undefined reference to `z_abs' > > > > ../appl/libappl.a(cmplxblas.o)(.text+0x110de):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5586: > > > > undefined reference to `z_abs' > > > > ../appl/libappl.a(cmplxblas.o)(.text+0x11146):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5586: > > > > undefined reference to `z_abs' > > > > ../appl/libappl.a(cmplxblas.o)(.text+0x1116e):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5588: > > > > more undefined references to `z_abs' follow > > > > collect2: ld returned 1 exit status > > > > make[3]: *** [R.bin] Error 1 > > > > make[3]: Leaving directory > > > > `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' > > > > make[2]: *** [R] Error 2 > > > > make[2]: Leaving directory > > > > `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' > > > > make[1]: *** [R] Error 1 > > > > make[1]: Leaving directory > > > > `/project/scratch3/ligroup/wuming/src/R-2.3.0/src' > > > > make: *** [R] Error 1 > > > > > > > > Is there any way to fix this problem? > > > > > > Hmm... It's not happening to me on a similar setup > > > > > > $ uname -a > > > Linux janus 2.6.16-1.2096_FC4smp #1 SMP Wed Apr 19 16:01:54 EDT 2006 > > > x86_64 x86_64 x86_64 GNU/Linux > > > > > > gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o > > > CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o > > > arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o > > > character.o coerce.o colors.o complex.o connections.o context.o cov.o > > > cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o > > > dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o > > > fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o > > > iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o > > > match.o memory.o model.o names.o objects.o optim.o optimize.o > > > options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o > > > print.o printarray.o printvector.o printutils.o qsort.o random.o > > > regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o > > > serialize.o size.o sort.o source.o split.o sprintf.o startup.o > > > subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o > > > version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a > > > ../nmath/libnmath.a -lblas -lgfortran -lm -lgcc_s > > > ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a > > > -lreadline -lncurses -ldl -lm > > > > > > Apparently, you are configuring without a BLAS library, but it is not > > > like I get into trouble by removing them from my setup. I'm puzzled. > > > > > > You might check whether you need to upgrade something in your system. > > > > > > > > > -- > > > O__ ---- Peter Dalgaard Øster Farimagsgade 5, Entr.B > > > c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K > > > (*) \(*) -- University of Copenhagen Denmark Ph: (+45) > > > 35327918 > > > ~~~~~~~~~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907 > > > > > > > -- > O__ ---- Peter Dalgaard Øster Farimagsgade 5, Entr.B > c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K > (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 > ~~~~~~~~~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907 > ______________________________________________ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html