Hi, I have a table of observed counts for various genetic markers. Instead of doing Fisher's exact test for each marker one at a time and recording the P value manually, is there a script to go through the whole list and generate the P value column automatically?
An example of my data: Counts_CHB and Counts_AA are the observed counts for one allele. 2N_CHB and 2N_AA are the total number of alleles. gene Local_Pos 2N_CHB 2N_AA Counts_CHB Counts_AA Exact_P B2M 2475 90 46 0 5 B2M 3532 90 44 0 1 FCN2 2203 88 46 0 1 FCN2 3536 90 46 0 9 FCN2 4027 84 46 0 9 FCN2 4036 90 46 0 9 FCN2 4318 90 46 0 9 FCN2 4392 90 46 0 9 FCN2 9575 90 46 0 1 ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
