I am trying to implement my own covariance matrix into R. Then be able to use it in gls or lme or nlme to analyze some data. I simply want to use corr=mymodel(form ~tim/peep) same as can use corr= corAR1 and many others. Having a terrible time trying to figure out how to do this. I have found documentation saying that you can do this but cant find out how. Any suggestings would be greatly appreciated.

My covariance matrix is:

| 1     s1^g    s2^g    s3^g    … |
| s1^g   1      s1^g    s2^g    … |
| s2^g  s1^g     1      s1^g    ... |
| s3^g  s2^g    s1^g    1       … |
|  :       :            :       :       : :: |
|  :       :           :        :       :::: |


Thankyou kindly for your time
Jonathan Smith

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