Let me clarify with a simpler example what I want to accomplish library(multcomp) data(recovery) Dcirec<-simint(minutes~blanket,data=recovery, conf.level=0.9, alternative="less") out.data.mat <- with(Dcirec,data.frame(estimate, conf.int, p.value.raw = c(p.value.raw), p.value.bon, p.value.adj))
I want to generate the same type of plot using out.data.mat that I get by plot(Dcirec) How do I specify the plot method how the data in out.data.mat is to be plotted? I am interested in doing this because, I am running about 1500 different comparisons, which creates 1500 different objects. I need to analyze them and combine significant ones into one plot. -----Original Message----- From: Greg Snow [mailto:[EMAIL PROTECTED] Sent: Tuesday, July 25, 2006 12:12 PM To: Nair, Murlidharan T Subject: RE: [R] Multcomp Doing: > str( fungus.cirec ) Suggests that fungus.cirec$conf.int contains the confidence intervals, you can manually plot the subset that you are intereseted in (and label them whatever you want) -- Gregory (Greg) L. Snow Ph.D. Statistical Data Center Intermountain Healthcare [EMAIL PROTECTED] (801) 408-8111 -----Original Message----- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Nair, Murlidharan T Sent: Saturday, July 22, 2006 11:00 AM To: [email protected] Subject: [R] Multcomp Here it is again, hope this is more clear I am using the following data (only a small subset is given): Habitat Fungus.yield Birch 20.83829053 Birch 22.9718181 Birch 22.28216829 Birch 24.23136797 Birch 22.32147961 Birch 20.30783598 Oak 27.24047258 Oak 29.7730014 Oak 30.12608508 Oak 25.76088669 Oak 30.14750974 Hornbeam 17.05307949 Hornbeam 15.32805111 Hornbeam 18.26920177 Hornbeam 21.30987049 Hornbeam 21.7173223 I am using the multcomp package to do multiple comparisons as follows library(multcomp) # loads the package fungus<-read.table("fungi.txt", Header=T) # Reads the data from file saved as fungi.txt fungus.cirec<-simint(Fungus.yield~Habitat, data=fungus,conf.level=0.95,type =c("Tukey")) # Computes cimultaneous intervals using Tukey's method plot(fungus.cirec) # plots the data The plot function plots all the comparisons, I want to plot only part of the data since it clutters the graph. How do I plot only part of the data ? How do I tell it to mark the significant comparisons? How do I get rid of the field names in the plot? For eg. The plot labels are HabitatBirch-HabitatOak, I want it to be labeled as Birch-Oak. Hope I have posted it according to the guidelines, let me know otherwise. Cheers .../Murli ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
