I apologize for my previous confusing example. Below is some sample
code, taken directly from the "image" help file, that reproduces a
postscript problem. This now happens with both R 2.3.1 and R 2.4
What I get appears to be output of only certain postscript "objects", to
use an Adobe term. When I use the R GUI menu to "save as", jpeg and pdf
files save correctly, but the postscript file does not. I am not getting
any axis labels or topo labels. This is true whether I import the PS
file into either Photoshop or Illustrator.
Thanks, Mark
x <- 10*(1:nrow(volcano))
y <- 10*(1:ncol(volcano))
image(x, y, volcano, col = terrain.colors(100), axes = FALSE)
contour(x, y, volcano, levels = seq(90, 200, by = 5),
add = TRUE, col = "peru")
axis(1, at = seq(100, 800, by = 100))
axis(2, at = seq(100, 600, by = 100))
box()
title(main = "Maunga Whau Volcano", font.main = 4)
> sessionInfo()
Version 2.3.1 (2006-06-01)
i386-pc-mingw32
attached base packages:
[1] "methods" "stats" "graphics" "grDevices" "utils"
"datasets"
[7] "base"
Mark W. Kimpel MD
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-----Original Message-----
From: Duncan Murdoch [mailto:[EMAIL PROTECTED]
Sent: Thursday, August 31, 2006 12:52 PM
To: Kimpel, Mark William
Cc: r-help@stat.math.ethz.ch
Subject: Re: [R] problem with postscript output of R-devel on Windows
On 8/31/2006 11:27 AM, Kimpel, Mark William wrote:
> I have developed a problem with the postscript output of plot on
Windows. My code still works properly with R 2.3 but, with R 2.4, the
white text on red background does not show up. It does, however, show up
when output is sent to the screen. Below is my code and sessionInfo.
>
> R version 2.4.0 Under development (unstable) (2006-08-29 r39012)
> i386-pc-mingw32
>
> locale:
> LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
>
> attached base packages:
> [1] "splines" "tools" "methods" "stats" "graphics"
"grDevices" "utils" "datasets"
> [9] "base"
>
> other attached packages:
> Rgraphviz geneplotter XML GOstats Category
hgu95av2 KEGG multtest xtable
> "1.11.9" "1.11.8" "0.99-8" "1.6.0" "1.4.1"
"1.12.0" "1.8.1" "1.11.2" "1.3-2"
> RBGL annotate GO graph Ruuid
limma genefilter survival rat2302
> "1.8.1" "1.11.5" "1.6.5" "1.11.13" "1.11.2"
"2.7.9" "1.11.8" "2.28" "1.12.0"
> affy affyio Biobase
> "1.11.6" "1.1.8" "1.11.29"
>
>
> fileName<-paste(experiment, contrast, "FDR", FDR, "Graph", "ps",
sep=".")
> postscript(file=fileName, paper="special",width=width,
height=height) #set up graphics device
> plot(result.gN, layout.param, nodeAttrs = nAttrs, edgeAttrs =
eAttrs,
> main=paste(paste("Experiment:", experiment, "; Contrast:",
contrast,"; FDR:", FDR, sep=""), paste("Min. connections ==",
min.edges, "Min. citations per connection ==", min.cites, "Additional
search criteria:",
> termAdditional, sep=" "), sep=" "))
Could you put together a reproducible example to illustrate the problem?
We don't have all the variables used in that example. I think you
should be able to do it with just base packages attached; if not, it's
likely a problem with one of the contributed packages, rather than with
R.
Duncan Murdoch
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