"Liaw, Andy" <[EMAIL PROTECTED]> writes: > Before I do that, I would need to remove the gcj stuff that are in /usr/bin. > If I know how to remove gcj, I'd gladly do that. However, for the > particular version of the OS, the entire GCC seems to be bundled into one > rpm, and I could not remove just the gcj component. Neither do I wish to > mess with files that are part of some RPMs--- in my experience that's > invitation for trouble later. > > Best, > Andy
Odd, I've done nothing in particular on FC5 and I got [EMAIL PROTECTED] BUILD]$ grep -i java Makeconf JAVA = /usr/bin/java JAVA_HOME = /usr/lib/jvm/java-1.5.0-sun-1.5.0.06/jre JAVA_LD_LIBRARY_PATH = $(JAVA_HOME)/lib/i386/client:$(JAVA_HOME)/lib/i386:$(JAVA_HOME)/../lib/i386:/usr/local/lib JAVA_LIBS = -L$(JAVA_HOME)/lib/i386/client -L$(JAVA_HOME)/lib/i386 -L$(JAVA_HOME)/../lib/i386 -L/usr/local/lib -ljvm JAVAC = /usr/bin/javac I suspect the installation of java was according to http://www.fedorafaq.org/#java and some of this has installed links from /usr/bin/javac to /usr/lib/jvm/java-1.5.0-sun/bin/javac (via /etc/alternatives/javac) Otherwise, there's always the option of actually reading the configure script... I notice that it starts off looking for JAVA_HOME. > From: mike waters > > > > I'm not familiar with gcj, but my initial reaction would be a > > ln -s for the relevant compiler executable from /usr/java > > into /usr/bin. > > > > -----Original Message----- > > From: [EMAIL PROTECTED] > > [mailto:[EMAIL PROTECTED] On Behalf Of Liaw, Andy > > Sent: 03 October 2006 19:40 > > To: r-help > > Subject: [R] how do I tell configure where to find Java? > > > > Dear R-help, > > > > I'm trying to build R-2.4.0 on our Opteron-based Scyld > > cluster. The system has gcj (the GNU Java compiler, part of > > GCC) stuff in /usr/bin. When I installed jdk 1.5.08, the > > install script placed it in /usr/java (I didn't have a > > choice, as the script didn't offer that option). Now when I > > run configure in R-2.4.0, it finds gcj, which is not what I > > want to use. Is there a way to tell configure where to look > > for Java? I tried configure --help but didn't see anything > > related to Java. > > > > Best, > > Andy > > > > Andy Liaw, PhD > > Biometrics Research PO Box 2000 RY33-300 > > Merck Research Labs Rahway, NJ 07065 > > andy_liaw(a)merck.com 732-594-0820 > > > > > > > > -------------------------------------------------------------- > > -------------- > > -- > > Notice: This e-mail message, together with any > > attachments,...{{dropped}} > > > > ______________________________________________ > > R-help@stat.math.ethz.ch mailing list > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide > > http://www.R-project.org/posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > > > > > > > > > > ------------------------------------------------------------------------------ > Notice: This e-mail message, together with any attachments,...{{dropped}} > > ______________________________________________ > R-help@stat.math.ethz.ch mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > -- O__ ---- Peter Dalgaard Ă˜ster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907 ______________________________________________ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.