On Wed, 18 Oct 2006, Alfonso M Sanchez-Lafuente wrote:
I've tried unsuccessfully to install lme4 on two different Redhat
systems but I've not noticed anything on this list to indicate anyone
else has had similar problems.
I am also having problems installing the latest lme4 0.9975-6 on 2.4.0
in Fedora Core 5.
The output is the following (sorry, it's in Spanish, but I think it can
be easlily understood because the messages are very simple).
Not surprising: you have not compiled R with -std=gnu99 to allow C99
features, as recommended in the R-admin manual, and selected by default.
(Comment to Doug Bates: it is probably better still to write in C90 if you
can.)
This seems to be a problem with the flags used to build the FC5 RPMs.
I think you can circumvent it by adding
PKG_CFLAGS=-std=gnu99
to lme4/src/Makevars.
--------cut--------
* Installing *source* package 'lme4' ...
** libs
gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include
-I"/usr/lib/R/library/Matrix/include" -fpic -O2 -g -pipe -Wall
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c glmer.c -o glmer.o
In file included from lmer.h:4,
from glmer.h:4,
from glmer.c:1:
lme4_utils.h: En la función ?internal_symmetrize?:
lme4_utils.h:82: error: se usó la declaración inicial del ciclo ?for?
fuera del modo C99
lme4_utils.h:83: error: se usó la declaración inicial del ciclo ?for?
fuera del modo C99
lme4_utils.h: En la función ?internal_make_named?:
lme4_utils.h:105: error: se usó la declaración inicial del ciclo ?for?
fuera del modo C99
lme4_utils.h: En la función ?internal_getElement?:
lme4_utils.h:124: error: se usó la declaración inicial del ciclo ?for?
fuera del modo C99
glmer.c: En la función ?random_effects_deviance?:
glmer.c:433: error: se usó la declaración inicial del ciclo ?for? fuera
del modo C99
glmer.c: En la función ?glmer_init?:
glmer.c:583: error: se usó la declaración inicial del ciclo ?for? fuera
del modo C99
make: *** [glmer.o] Error 1
ERROR: compilation failed for package 'lme4'
** Removing '/usr/lib/R/library/lme4'
** Restoring previous '/usr/lib/R/library/lme4'
Warning message:
installation of package 'lme4' had non-zero exit status in:
install.packages(update[, "Package"], instlib, contriburl = contriburl,
--
Brian D. Ripley, [EMAIL PROTECTED]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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