Farrel Buchinsky <fjbuch <at> gmail.com> writes: > Clearly g1 and g2 are not exactly the same even though they are the same > class. > I can make g2 behave as g1 if i type > g3<-genotype(g2) > g3 then behaves as it should. > > The issue may have arrisen since g2 is just a subset of a much bigger object > that was created using reshape command in the base package or maybe melt and > cast in the reshape package. Can anyone enlighten me?
genotype class behaves internally much like factor class. I guess that levels/alleles were dropped somewhere. You have to figure out where this happened. Gregor ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
